Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12g21f
(524 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 177 5e-45
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 177 5e-45
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 175 1e-44
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 171 2e-43
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 33 0.089
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.47
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 0.83
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 2.5
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 2.5
At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein si... 27 5.8
At1g30080.1 68414.m03677 glycosyl hydrolase family 17 protein si... 27 7.7
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 177 bits (430), Expect = 5e-45
Identities = 84/156 (53%), Positives = 107/156 (68%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 235
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 236 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 415
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 416 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 523
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQ 157
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 177 bits (430), Expect = 5e-45
Identities = 84/156 (53%), Positives = 107/156 (68%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 235
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 236 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 415
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 416 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 523
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQ 157
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 175 bits (427), Expect = 1e-44
Identities = 83/156 (53%), Positives = 106/156 (67%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 235
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 236 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 415
M++C+LGD QH +EA+ + + M SES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 121
Query: 416 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 523
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQ 157
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 171 bits (417), Expect = 2e-43
Identities = 81/157 (51%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
Frame = +2
Query: 56 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 232
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 233 KMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIP 412
KM++C+LGD QH +EA+ + + M SES+IKQIP
Sbjct: 62 KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIP 121
Query: 413 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 523
RLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ
Sbjct: 122 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQ 158
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 33.5 bits (73), Expect = 0.089
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 35 SLTNKMSSKVSRDTLYECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGT 205
S + +S + + +E + LQS ++K R +E + D + K+ +
Sbjct: 275 SARSSLSEEATSLLRWEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHL 334
Query: 206 VKLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 304
+K + PK +VCV D +CDE L VP +
Sbjct: 335 LKAPFCVHPKTGRVCVPIDPNNCDEFDPLAVPTL 368
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 134 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 247
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 0.83
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 53 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 193
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 234 FGRGMYFSFTVPEKRLSFC 178
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -1
Query: 212 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 36
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
>At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 397
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/79 (17%), Positives = 39/79 (49%)
Frame = +2
Query: 53 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 232
S ++++ +Y+ +L + + + T+E Q+ DPQ+ ++ + Y+P
Sbjct: 57 SLRITKTRIYDTNPQILSAFANSNIEIIVTIENQVLPLLQDPQQATQWVDSHIKPYVPAT 116
Query: 233 KMQVCVLGDQQHCDEAKTL 289
++ ++G++ D+ +L
Sbjct: 117 RITGIMVGNELFTDDDSSL 135
>At1g30080.1 68414.m03677 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 408
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/79 (22%), Positives = 36/79 (45%)
Frame = +2
Query: 53 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 232
S +++ +Y+ VL S + TVE ++ DPQ+ ++ T Y P
Sbjct: 59 SLHINKTRIYDTNPRVLTSFANSNIELFVTVENEMLPSLVDPQQALQWVTTRIKPYFPAT 118
Query: 233 KMQVCVLGDQQHCDEAKTL 289
K+ +G++ + D+ +L
Sbjct: 119 KIGGIAVGNELYTDDDSSL 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,481,419
Number of Sequences: 28952
Number of extensions: 224708
Number of successful extensions: 569
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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