Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g18r
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    30   0.33 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.58 
SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.4  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    24   1.5  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    24   1.5  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   2.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   2.4  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   3.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   3.1  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   4.1  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   5.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   7.2  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.5  

>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -1

Query: 396 KVIDKLRAGYYDDL---IAKWCIEKQLCSDYENADLALKFSFPSPVSSLPYLQYYSYCDS 226
           K +D+L AGYYDD     A+  IEK    D +  D  L    PS    L      S  D+
Sbjct: 164 KFMDRLDAGYYDDFQLPTAEDVIEKPSIPDNDTDDSIL----PSNDPQLSKWNQDSRNDA 219

Query: 225 VDLSNQQLTSNIFPSLIVLQ 166
           ++  N  L S++ P++ V Q
Sbjct: 220 ME--NTLLVSHVLPNISVAQ 237


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -1

Query: 690 ITKKINIKVEYEIDNGQKQIIQGVECKEMFYIGKNQIKFERNYS--EAVIEELKDQLESC 517
           I+K    KV+ + D     + QG+E +    +G  +     N S  E  + +  + LES 
Sbjct: 631 ISKSNLEKVDVKGDTSPNSVEQGIEPQAASVVGSPRSSLVSNNSLEEGALLKNSESLESI 690

Query: 516 RQLLNLEPDSKWTMLTT 466
              L+ EPD   T L T
Sbjct: 691 YGYLSEEPDPALTKLNT 707


>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 100

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 484 MDNANNHNFPTLYRCQ 437
           +D+ANNHN   LY CQ
Sbjct: 74  LDDANNHNHAFLYHCQ 89


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 24.2 bits (50), Expect(2) = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 447 IDAKAYHTEAIQNLQKLKVID-KLRAGYYDDLIAKWC 340
           I+ K +  E +Q+L KLK  + K+R G +DD     C
Sbjct: 197 INVKFFEKEDVQSL-KLKYYEQKIRIGLHDDAYLDVC 232



 Score = 22.2 bits (45), Expect(2) = 1.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 318 DYENADLALKFSFPSPVSSLPYLQYYSYC 232
           D E ADL  + +    ++SLP LQ    C
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKC 296


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 24.2 bits (50), Expect(2) = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 447 IDAKAYHTEAIQNLQKLKVID-KLRAGYYDDLIAKWC 340
           I+ K +  E +Q+L KLK  + K+R G +DD     C
Sbjct: 197 INVKFFEKEDVQSL-KLKYYEQKIRIGLHDDAYLDVC 232



 Score = 22.2 bits (45), Expect(2) = 1.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 318 DYENADLALKFSFPSPVSSLPYLQYYSYC 232
           D E ADL  + +    ++SLP LQ    C
Sbjct: 268 DNEQADLLHRINADHKLNSLPLLQQLVKC 296


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 51  FRFYPTFHYPANSILPDPNLENSSLL 128
           F+ YP+F+YPA  + P  +   SS++
Sbjct: 370 FKGYPSFYYPATLVAPVHSAVTSSIM 395


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 3/193 (1%)
 Frame = -1

Query: 684  KKINIKVEYEIDNGQKQIIQGVECKEMFYIGKNQIKFERNYSEAVIEELKDQLESCRQLL 505
            K++ IK+E ++ N    +      ++ FY  KNQ  FE        +E+K   E   QLL
Sbjct: 1104 KELAIKIE-QVTNSCSDLELRTNAEQDFY-AKNQ-DFE-------FDEIKRYEE---QLL 1150

Query: 504  NLEPDSKWTMLTTTIFLHCIDAKAYHTEAIQNLQKLKVIDKLRAGYY--DDLIAKWCIEK 331
            NL+ +  WT+++ T     +   A +  A+        ++ LR  +    D+  K+  E 
Sbjct: 1151 NLKNELGWTIVSLTAGGIKL---ATNNTALSPYSAEVTVEILRQNFQVNVDIACKFPNES 1207

Query: 330  QLCSDYENADLALKFS-FPSPVSSLPYLQYYSYCDSVDLSNQQLTSNIFPSLIVLQHCKK 154
              CS      +A  FS + S V S        Y + V +  +Q+   +     +  H   
Sbjct: 1208 NACSSNVLEHVASSFSKWHSKVFSRNLRLLKKYLNDVSICWEQIVYLVQDFQRLWYHWPF 1267

Query: 153  LSLENNNLTTMKN 115
            LS+EN++ + + N
Sbjct: 1268 LSVENDDKSIIIN 1280


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = +3

Query: 99  DPNLENSSLLSSYCSPMIISCNVAELLKKEIY*KSVVDW 215
           D +++N + L  + + + IS + A+ +K+EIY KS+V+W
Sbjct: 279 DKSIKNFAYLE-HRTFLTISNSAAKDMKREIYEKSLVNW 316


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 255  YLQYYSYCDSVDLSNQQLTSNI---FPSLIVLQHCKKLSLENNNLTTMKNFPD 106
            Y   ++ CD+    N  L  +I   +  L+    C++L LENN    ++NF +
Sbjct: 1194 YEMTFNDCDAFSEFNFSLLKDITSKWKDLLESFECRRLKLENNKDEILRNFSE 1246


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 159 KKLSLENNNLTTMKNFPDLDLVELNLLGNE 70
           +KL L+    TT+KN  ++D +E   LG+E
Sbjct: 639 EKLKLKYQQFTTLKNLKNIDSLESLELGHE 668


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -1

Query: 408 LQKLKVIDKLRAGYYDDLIAKWCIEK---QLCSDYENADLAL--KFSFPSPV 268
           L ++++  K    +YD+L  KWC E+    +     + D+AL  KF+ P  +
Sbjct: 776 LIRIELDIKYATSFYDELNEKWCSEEGEYNVLVGTSSKDIALTGKFTLPKTI 827


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = -1

Query: 300 LALKFSFPSPVSSLPYLQYYSYCDSVDLSNQQL--TSNIFPSLIVLQHCKKLSLENNN-- 133
           LAL   F    +SLP L++    D+V L N+     ++  P+L  +     +SL+ +   
Sbjct: 463 LALAPHFFEIFASLPELEHLEIPDNVALQNKHAIHITDCCPNLKYVNFSNSISLDGSGFI 522

Query: 132 --LTTMKNFPDLDLVELNLLGNEKLD 61
             L  +K    +D++  + +  + +D
Sbjct: 523 AVLRGLKELKRIDIINCDSVSRDAID 548


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -1

Query: 150 SLENNNLTTMKNFPDLDLVELNLLGNEKLDRNEIELFTK---KYNFNIIY 10
           SL++   +T+KNF  +++++LN+  ++    N +   +K    YNF  IY
Sbjct: 89  SLQSTIHSTLKNFQKINVLQLNINASD----NSLAYLSKPEESYNFLTIY 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,008
Number of Sequences: 5004
Number of extensions: 70012
Number of successful extensions: 223
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)