Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g18r
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5397| Best HMM Match : LRR_1 (HMM E-Value=1.9)                      40   0.002
SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34)                  34   0.12 
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_4988| Best HMM Match : Upf2 (HMM E-Value=3.3)                       31   1.4  
SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_18353| Best HMM Match : Mod_r (HMM E-Value=0.0004)                  31   1.4  
SB_17430| Best HMM Match : Kazal_1 (HMM E-Value=1e-07)                 30   1.9  
SB_13131| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)                     30   2.5  
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_3061| Best HMM Match : Tropomodulin (HMM E-Value=0.032)             29   4.4  
SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)              29   5.8  
SB_13761| Best HMM Match : MoeZ_MoeB (HMM E-Value=8.7)                 28   7.7  
SB_36774| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_5397| Best HMM Match : LRR_1 (HMM E-Value=1.9)
          Length = 193

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = -1

Query: 477 MLTTTIFLHCIDAKAYHTEAIQNLQKLKVIDKLRAGYYDDLIAKWCIEKQLCSDYENADL 298
           MLTT + +  +D   Y +E  + L KL  +D  R  YY+D   K+ +E  +   ++ +DL
Sbjct: 67  MLTTVLLMRALDPLRYESEINEFLDKLTKVDPYRQEYYNDTRKKFRLENAMERYWKASDL 126

Query: 297 ALKFSFPSPVSSLPYLQ 247
             +    S +S+L  LQ
Sbjct: 127 YYQTDI-SKLSALEALQ 142


>SB_51889| Best HMM Match : PPTA (HMM E-Value=6.3e-34)
          Length = 428

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 477 MLTTTIFLHCIDAKAYHTEAIQNLQKLKVIDKLRAGYYDD 358
           MLTT + +  +D   Y +E  + L KL  +D  R  YY+D
Sbjct: 387 MLTTVLLMRALDPLRYESEINEFLDKLTKVDPYRQEYYND 426


>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1110

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
 Frame = -1

Query: 621  VECKEMFYIGKNQIKFERNYSEAVIEELKDQLE--SCRQLLNLEPDSKWTMLTTTIFLHC 448
            + C E      N +K  +NY+  V++   D  E  S + +  +     WT+   ++ LHC
Sbjct: 905  LHCSEGVVALANALK--QNYNLRVLDLEGDSFERDSVKAIAEML-SGNWTLQDLSLRLHC 961

Query: 447  IDAKAYHTEAIQNLQKLKVIDKLRAGYYDDLIAKWCIEKQLCSDYENADLALKFSFPSPV 268
             +      +A++    L+V+ +L  G ++    K  I + L  ++   DL+L+F     V
Sbjct: 962  SEGVVALAKALKQNTTLRVL-RLEGGSFESDSVK-AIAEMLSGNWTLQDLSLRFHCSEGV 1019

Query: 267  SSL 259
             +L
Sbjct: 1020 VAL 1022


>SB_4988| Best HMM Match : Upf2 (HMM E-Value=3.3)
          Length = 203

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = -1

Query: 483 WTMLTTTIFLHCIDAKAYHTEAIQNLQKLKVIDKLRAGYYDDLIAKWCIEKQLCSDYENA 304
           WT+   ++ LHC         A++   +L+V+ KL  G +D+  +   I + L  + +  
Sbjct: 87  WTLQYLSLRLHCSKGVVALANALKKNNELRVL-KLEGGIFDESDSVKAIAEMLSQNEKLQ 145

Query: 303 DLALKFSFPSPVSSL 259
           +L+LK      V +L
Sbjct: 146 ELSLKLHCSEGVVAL 160


>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
 Frame = -1

Query: 615 CKEMFYIGKNQIKFERN--YSEAVIEELKD--QLESCRQLLNLEPDSKWTMLTTTIFL-- 454
           CK + Y  K    F R   Y+ + + +LK   Q +    +LN+  +       + I+L  
Sbjct: 29  CKNIIYSRKQWFSFTRRTFYASSKLLQLKRLAQAKQSSHMLNVVWNDDTVSKYSYIYLRD 88

Query: 453 HCIDAKAYHTEAIQNLQKLKVID 385
           HC+ +  YH  + Q L  +K +D
Sbjct: 89  HCLCSTCYHPTSEQRLTHMKNLD 111


>SB_18353| Best HMM Match : Mod_r (HMM E-Value=0.0004)
          Length = 85

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/54 (31%), Positives = 33/54 (61%)
 Frame = -1

Query: 681 KINIKVEYEIDNGQKQIIQGVECKEMFYIGKNQIKFERNYSEAVIEELKDQLES 520
           + N+K+E +++ G++Q+I+  E +EM      Q +F+ N  +A ++ L DQ  S
Sbjct: 20  EFNLKIEPQLNQGRQQLIEAHERREML-----QAQFQSN--KAKLDTLSDQYSS 66


>SB_17430| Best HMM Match : Kazal_1 (HMM E-Value=1e-07)
          Length = 396

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -1

Query: 372 GYYDDLIAKWCIEKQLCSDYENADLALKFSFPSPVSSLPYLQYYSYCDSVDLSNQQLTSN 193
           G + D+   W     L ++  N++L   F FP+    LP    ++YC  V LSN     N
Sbjct: 241 GLHKDINVNWIAASSLPAEM-NSELKTLF-FPNTNLPLP-ADNFAYCQDVALSNYTSVPN 297

Query: 192 IFPSLIVLQHCKKLSLENNNLT 127
           +  S +  Q       E N+++
Sbjct: 298 VIVSAVHKQSFGSTIPEYNSIS 319


>SB_13131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -1

Query: 372 GYYDDLIAKWCIEKQLCSDYENADLALKFSFPSPVSSLPYLQYYSYCDSVDLSNQQLTSN 193
           G + D+   W     L ++  N++L   F FP+    LP    ++YC  V LSN     N
Sbjct: 395 GLHKDINVNWIAASSLPAEM-NSELKTLF-FPNTNLPLP-ADNFAYCQDVALSNYTSVPN 451

Query: 192 IFPSLIVLQHCKKLSLENNNLT 127
           +  S +  Q       E N+++
Sbjct: 452 VIVSAVHKQSFGSTIPEYNSIS 473


>SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)
          Length = 754

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 234 CDSVDLSNQQLT-SNIFPSLIVLQHCKKLSLENNNLTTM 121
           C  ++L N  +T     PS + ++ C+KL L NN++T M
Sbjct: 215 CRKLELLNNSVTVCESNPSFLCIRLCRKLELLNNSVTVM 253


>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 687 TKKINIKVEYEIDNGQKQIIQGVECKEMFYIGKNQIKFERNYS 559
           T K N   + EI N  K ++Q + CK    +G+N ++  +N+S
Sbjct: 265 TGKFNYPSDVEISNNAKDLMQRLCCKASQRLGQNGMEDFKNHS 307


>SB_3061| Best HMM Match : Tropomodulin (HMM E-Value=0.032)
          Length = 614

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = -1

Query: 483 WTMLTTTIFLHCIDAKAYHTEAIQNLQKLKVIDKLRAGYYDDLIAKWCIEKQLCSDYENA 304
           WT+   ++ LHC +       A++   +L+V+ KL  G ++    K  I   L  ++   
Sbjct: 444 WTLQDLSLRLHCSEGVVALANALKKNNELRVL-KLEGGIFESDSVK-AITDMLSENWTLQ 501

Query: 303 DLALKFSFPSPVSSL 259
           DL+L+      V +L
Sbjct: 502 DLSLRLHCSEGVVAL 516


>SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 549 IEELKDQLESCRQLLNLEPDSKWTMLTTTI--FLHCIDAKAYHTEAIQNL 406
           I++ K+QLE  +QLL   P    T+L  T+    H ID  + +  ++QN+
Sbjct: 202 IQDKKEQLEKTKQLLAELPSPNRTLLAWTMVHMGHVIDKASENKMSLQNI 251


>SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)
          Length = 657

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 741 CTGNCY-DVLWIFQHSTPITKKINIKVEYEIDNGQKQIIQGVECKEMFYIGKNQIKFERN 565
           CTG+CY  +L ++ H+  I K   ++ + E+          +    + Y  K++  F+ N
Sbjct: 588 CTGSCYGHILPVYHHTEVIQKVALLRKQRELSPCCAP--TKMFDLSLLYYDKDENLFQEN 645

Query: 564 YSEAVIEE 541
            S  V+EE
Sbjct: 646 VSNMVVEE 653


>SB_13761| Best HMM Match : MoeZ_MoeB (HMM E-Value=8.7)
          Length = 275

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 57  FYPTFHYPANSILPDPNLENSSLLSSYCSPMIIS-CNVAE 173
           F P  HYPA   LP P +      S Y    +IS C + E
Sbjct: 136 FMPAIHYPAVLSLPAPQVPKYKYPSFYILVYLISDCGITE 175


>SB_36774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = -1

Query: 426 TEAIQNLQKLKVIDKLRA-----GYYDDLI-AKWCIEKQLCSDYENADLALK 289
           TEA +N   LK I KL+      GY   ++  +W + +Q   D+   DL LK
Sbjct: 108 TEAERNALMLKTIPKLKLFCQEKGYEFQVVDMRWGVREQSADDHTTVDLCLK 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,354,062
Number of Sequences: 59808
Number of extensions: 464315
Number of successful extensions: 1355
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)