Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12g18r
(804 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl transf... 84 7e-16
CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein. 84 7e-16
BC003093-1|AAH03093.1| 567|Homo sapiens Rab geranylgeranyltrans... 84 7e-16
BX538330-1|CAD98099.1| 358|Homo sapiens hypothetical protein pr... 81 5e-15
BC117370-1|AAI17371.1| 1065|Homo sapiens leucine-rich repeats an... 33 1.6
BC117368-1|AAI17369.1| 1065|Homo sapiens leucine-rich repeats an... 33 1.6
AL357055-1|CAH73254.1| 1065|Homo sapiens leucine-rich repeats an... 33 1.6
AB018349-1|BAA34526.2| 1073|Homo sapiens KIAA0806 protein protein. 33 1.6
U88879-1|AAC34134.1| 904|Homo sapiens Toll-like receptor 3 prot... 32 2.1
DQ445682-1|ABE01399.1| 904|Homo sapiens Toll-like receptor 3 is... 32 2.1
BC096335-1|AAH96335.1| 904|Homo sapiens toll-like receptor 3 pr... 32 2.1
BC096334-1|AAH96334.1| 904|Homo sapiens toll-like receptor 3 pr... 32 2.1
BC096333-1|AAH96333.1| 904|Homo sapiens toll-like receptor 3 pr... 32 2.1
BC094737-1|AAH94737.1| 904|Homo sapiens toll-like receptor 3 pr... 32 2.1
BC059372-1|AAH59372.1| 870|Homo sapiens TLR3 protein protein. 32 2.1
>Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl
transferase protein.
Length = 567
Score = 83.8 bits (198), Expect = 7e-16
Identities = 47/161 (29%), Positives = 88/161 (54%)
Frame = -1
Query: 540 LKDQLESCRQLLNLEPDSKWTMLTTTIFLHCIDAKAYHTEAIQNLQKLKVIDKLRAGYYD 361
L+ +LESC++L LEP++KW +LT + + +D Y E +Q Q LK +D +RA Y D
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFQTLKAVDPMRATYLD 423
Query: 360 DLIAKWCIEKQLCSDYENADLALKFSFPSPVSSLPYLQYYSYCDSVDLSNQQLTSNIFPS 181
DL +K+ +E + E A++ + ++ L +L+ +DLS+ +L + + P+
Sbjct: 424 DLRSKFLLENSVLK-MEYAEVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRT-LPPA 481
Query: 180 LIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDR 58
L L+ + L +N + ++ +L ++ LL N +L +
Sbjct: 482 LAALRCLEVLQASDNAIESLDGVTNLPRLQELLLCNNRLQQ 522
>CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein.
Length = 567
Score = 83.8 bits (198), Expect = 7e-16
Identities = 47/161 (29%), Positives = 88/161 (54%)
Frame = -1
Query: 540 LKDQLESCRQLLNLEPDSKWTMLTTTIFLHCIDAKAYHTEAIQNLQKLKVIDKLRAGYYD 361
L+ +LESC++L LEP++KW +LT + + +D Y E +Q Q LK +D +RA Y D
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFQTLKAVDPMRATYLD 423
Query: 360 DLIAKWCIEKQLCSDYENADLALKFSFPSPVSSLPYLQYYSYCDSVDLSNQQLTSNIFPS 181
DL +K+ +E + E A++ + ++ L +L+ +DLS+ +L + + P+
Sbjct: 424 DLRSKFLLENSVLK-MEYAEVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRT-LPPA 481
Query: 180 LIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDR 58
L L+ + L +N + ++ +L ++ LL N +L +
Sbjct: 482 LAALRCLEVLQASDNAIESLDGVTNLPRLQELLLCNNRLQQ 522
>BC003093-1|AAH03093.1| 567|Homo sapiens Rab
geranylgeranyltransferase, alpha subunit protein.
Length = 567
Score = 83.8 bits (198), Expect = 7e-16
Identities = 47/161 (29%), Positives = 88/161 (54%)
Frame = -1
Query: 540 LKDQLESCRQLLNLEPDSKWTMLTTTIFLHCIDAKAYHTEAIQNLQKLKVIDKLRAGYYD 361
L+ +LESC++L LEP++KW +LT + + +D Y E +Q Q LK +D +RA Y D
Sbjct: 364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFQTLKAVDPMRATYLD 423
Query: 360 DLIAKWCIEKQLCSDYENADLALKFSFPSPVSSLPYLQYYSYCDSVDLSNQQLTSNIFPS 181
DL +K+ +E + E A++ + ++ L +L+ +DLS+ +L + + P+
Sbjct: 424 DLRSKFLLENSVLK-MEYAEVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRT-LPPA 481
Query: 180 LIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDR 58
L L+ + L +N + ++ +L ++ LL N +L +
Sbjct: 482 LAALRCLEVLQASDNAIESLDGVTNLPRLQELLLCNNRLQQ 522
>BX538330-1|CAD98099.1| 358|Homo sapiens hypothetical protein
protein.
Length = 358
Score = 81.0 bits (191), Expect = 5e-15
Identities = 46/162 (28%), Positives = 86/162 (53%)
Frame = -1
Query: 540 LKDQLESCRQLLNLEPDSKWTMLTTTIFLHCIDAKAYHTEAIQNLQKLKVIDKLRAGYYD 361
L+ +LESC++L LEP++KW +LT + + +D Y E ++ LK +D +RA Y D
Sbjct: 155 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLEYFSTLKAVDPMRAAYLD 214
Query: 360 DLIAKWCIEKQLCSDYENADLALKFSFPSPVSSLPYLQYYSYCDSVDLSNQQLTSNIFPS 181
DL +K+ +E + E AD+ + ++ L +L+ +DLS+ +L + + P+
Sbjct: 215 DLRSKFLVENSVLK-MEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPA 272
Query: 180 LIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDRN 55
L L+ + L ++ L + +L + LL N +L ++
Sbjct: 273 LAALRCLEVLQASDSVLENLDGVANLPRLRELLLCNNRLQQS 314
>BC117370-1|AAI17371.1| 1065|Homo sapiens leucine-rich repeats and
immunoglobulin-like domains 2 protein.
Length = 1065
Score = 32.7 bits (71), Expect = 1.6
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = -1
Query: 252 LQYYSYCDSVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGN 73
LQ+Y +S+DLS+ + S I S K L+L NN +TT++ D + +LL
Sbjct: 140 LQFYPALESLDLSSN-IISEIKTSSFPRMQLKYLNLSNNRITTLE-AGCFDNLSSSLL-V 196
Query: 72 EKLDRNEIELFTKK 31
KL+RN + + K
Sbjct: 197 VKLNRNRMSMIPPK 210
>BC117368-1|AAI17369.1| 1065|Homo sapiens leucine-rich repeats and
immunoglobulin-like domains 2 protein.
Length = 1065
Score = 32.7 bits (71), Expect = 1.6
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = -1
Query: 252 LQYYSYCDSVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGN 73
LQ+Y +S+DLS+ + S I S K L+L NN +TT++ D + +LL
Sbjct: 140 LQFYPALESLDLSSN-IISEIKTSSFPRMQLKYLNLSNNRITTLE-AGCFDNLSSSLL-V 196
Query: 72 EKLDRNEIELFTKK 31
KL+RN + + K
Sbjct: 197 VKLNRNRMSMIPPK 210
>AL357055-1|CAH73254.1| 1065|Homo sapiens leucine-rich repeats and
immunoglobulin-like domains 2 protein.
Length = 1065
Score = 32.7 bits (71), Expect = 1.6
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = -1
Query: 252 LQYYSYCDSVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGN 73
LQ+Y +S+DLS+ + S I S K L+L NN +TT++ D + +LL
Sbjct: 140 LQFYPALESLDLSSN-IISEIKTSSFPRMQLKYLNLSNNRITTLE-AGCFDNLSSSLL-V 196
Query: 72 EKLDRNEIELFTKK 31
KL+RN + + K
Sbjct: 197 VKLNRNRMSMIPPK 210
>AB018349-1|BAA34526.2| 1073|Homo sapiens KIAA0806 protein protein.
Length = 1073
Score = 32.7 bits (71), Expect = 1.6
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = -1
Query: 252 LQYYSYCDSVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGN 73
LQ+Y +S+DLS+ + S I S K L+L NN +TT++ D + +LL
Sbjct: 148 LQFYPALESLDLSSN-IISEIKTSSFPRMQLKYLNLSNNRITTLE-AGCFDNLSSSLL-V 204
Query: 72 EKLDRNEIELFTKK 31
KL+RN + + K
Sbjct: 205 VKLNRNRMSMIPPK 218
>U88879-1|AAC34134.1| 904|Homo sapiens Toll-like receptor 3
protein.
Length = 904
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = -1
Query: 228 SVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDRNEI 49
++DLS+ L+S + + L++ ++L L NN + +K+ +LD+ + L +L N+I
Sbjct: 151 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLELSSNQI 209
Query: 48 ELFT 37
+ F+
Sbjct: 210 KEFS 213
>DQ445682-1|ABE01399.1| 904|Homo sapiens Toll-like receptor 3
isoform NT2-N protein.
Length = 904
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = -1
Query: 228 SVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDRNEI 49
++DLS+ L+S + + L++ ++L L NN + +K+ +LD+ + L +L N+I
Sbjct: 151 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLELSSNQI 209
Query: 48 ELFT 37
+ F+
Sbjct: 210 KEFS 213
>BC096335-1|AAH96335.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = -1
Query: 228 SVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDRNEI 49
++DLS+ L+S + + L++ ++L L NN + +K+ +LD+ + L +L N+I
Sbjct: 151 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLELSSNQI 209
Query: 48 ELFT 37
+ F+
Sbjct: 210 KEFS 213
>BC096334-1|AAH96334.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = -1
Query: 228 SVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDRNEI 49
++DLS+ L+S + + L++ ++L L NN + +K+ +LD+ + L +L N+I
Sbjct: 151 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLELSSNQI 209
Query: 48 ELFT 37
+ F+
Sbjct: 210 KEFS 213
>BC096333-1|AAH96333.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = -1
Query: 228 SVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDRNEI 49
++DLS+ L+S + + L++ ++L L NN + +K+ +LD+ + L +L N+I
Sbjct: 151 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLELSSNQI 209
Query: 48 ELFT 37
+ F+
Sbjct: 210 KEFS 213
>BC094737-1|AAH94737.1| 904|Homo sapiens toll-like receptor 3
protein.
Length = 904
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = -1
Query: 228 SVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDRNEI 49
++DLS+ L+S + + L++ ++L L NN + +K+ +LD+ + L +L N+I
Sbjct: 151 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLELSSNQI 209
Query: 48 ELFT 37
+ F+
Sbjct: 210 KEFS 213
>BC059372-1|AAH59372.1| 870|Homo sapiens TLR3 protein protein.
Length = 870
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = -1
Query: 228 SVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDRNEI 49
++DLS+ L+S + + L++ ++L L NN + +K+ +LD+ + L +L N+I
Sbjct: 151 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLELSSNQI 209
Query: 48 ELFT 37
+ F+
Sbjct: 210 KEFS 213
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,311,182
Number of Sequences: 237096
Number of extensions: 2216358
Number of successful extensions: 4784
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4784
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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