Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12g18r
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical ... 50 1e-06
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 35 0.078
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 33 0.18
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical... 31 1.3
Z72508-6|CAA96643.1| 415|Caenorhabditis elegans Hypothetical pr... 30 1.7
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 30 1.7
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p... 29 3.9
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein. 29 3.9
AF040661-5|AAG24212.1| 209|Caenorhabditis elegans Hypothetical ... 29 3.9
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 29 3.9
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 29 3.9
Z82274-9|CAB05232.2| 260|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical pr... 28 6.8
AF077534-7|AAK71376.1| 319|Caenorhabditis elegans Prion-like-(q... 28 6.8
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 28 9.0
U80029-19|AAB37598.1| 139|Caenorhabditis elegans Hypothetical p... 28 9.0
>AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical
protein M57.2 protein.
Length = 580
Score = 50.4 bits (115), Expect = 1e-06
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 7/183 (3%)
Frame = -1
Query: 630 IQGVECKEMFYIGKNQIKFERNYSEAVIEE-LKDQLESCRQLLNLEPDSKWTM-LTTTIF 457
I E E Y+ +++K + E + + LE C+QL+ LEP +KW + + T +
Sbjct: 342 ISWTELNEQPYVNLDRLKTIYDVVEVPQPAYIGELLEDCKQLIELEPKNKWPLYMRTLVL 401
Query: 456 LHCIDAKAYHTEAIQNLQKL-KVIDKLRAGYYDDLIAKWCIEKQLCSDYE---NADLALK 289
L K+Y E I+NL+ L + +D R+ Y LI++ + + +E D
Sbjct: 402 LEYQPIKSYE-EIIKNLENLSENLDPKRSELYKSLISRQNLNFSIREQFERILGPDTDWL 460
Query: 288 FSFPSPVSSLPYLQYYS-YCDSVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNF 112
S ++SL ++Y + + S D S +L IVL + K L++ N + ++
Sbjct: 461 TCRYSKLTSLEGVEYLAGFVGSADFSGNRLKE---IQRIVLPNLKSLTINENPIESLPPS 517
Query: 111 PDL 103
P L
Sbjct: 518 PCL 520
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 34.7 bits (76), Expect = 0.078
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = -1
Query: 231 DSVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNEKLDRNE 52
+S+ L N QL FPSL L + L L+NN + + NF DL +L L L N+
Sbjct: 371 ESLFLQNNQLAH--FPSLFRLDKLRHLMLDNNQIQKIDNFSLADLPKLQHL---SLAGNQ 425
Query: 51 IELFTK 34
+++ T+
Sbjct: 426 LDIITE 431
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 33.5 bits (73), Expect = 0.18
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Frame = -1
Query: 321 SDYENADLA-LKFSFPSPVSSLPYL---QYYSYCDSVDLSNQQLTSNIFPSLIVLQHCKK 154
S + N D + L F S V + P L + YS D + QQL I P ++ ++H +
Sbjct: 85 SVFGNKDASVLVFDKKSNVKAPPKLGKSKTYSMFDLIKYETQQLMGLIHPRILHMEHSLE 144
Query: 153 LSLENNNLTTMKNFPDLDLVELNLLGNEKLDRNEIEL 43
+ + + T + F +L+ N++ +E LDR EI+L
Sbjct: 145 ETKDYISFATEQIFGNLE----NVVTDESLDRLEIKL 177
>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
protein T05H4.3 protein.
Length = 1152
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -1
Query: 231 DSVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNFPDLDLVELNLLGNE 70
+SVDLSN + + I L L L+L+NN LTT+ +LV L++ N+
Sbjct: 956 ESVDLSNNSIKTIIRRPLKTLT---SLNLQNNKLTTLTPLSCPNLVSLDISNNK 1006
>Z72508-6|CAA96643.1| 415|Caenorhabditis elegans Hypothetical
protein F28H7.7 protein.
Length = 415
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -1
Query: 546 EELKDQLESCRQLLNLEPDSKWTMLTTTIFLHCIDAKAYHTEAIQNLQKL 397
E+L ++ + Q++ P KW LTT +L+C D K ++ I N QK+
Sbjct: 288 EKLPEKFINPVQIMQEMPSRKWE-LTTQPWLNCTDGKHCFSKMIVNNQKV 336
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 30.3 bits (65), Expect = 1.7
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Frame = -1
Query: 612 KEMFYIGKNQIKFERNYSEAVIEELKDQLESCRQLLNLEPDSKWTM-LTTTIFLHCIDAK 436
K FY G++ I L + C L++ D+ + L T +HC A+
Sbjct: 443 KLRFYDGRSTDPVRTVDMGGRITSLDVTMSGCELLVSTRDDTISLIDLRTFQTVHCYSAE 502
Query: 435 AYHTEA-IQNLQKLKVIDKLRAGYYDDLIAKWC-----IEKQLCSDYENADLALKFS 283
Y T + + + + + AG + I W +EKQLCS+ ENA +L ++
Sbjct: 503 NYRTSSDLSRVVLSSGNEYVAAGSSNGSIFVWNRNSTKLEKQLCSNSENAIFSLSWN 559
>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
protein 83, isoform a protein.
Length = 1041
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 558 EAVIEELKDQLESCRQLLNLEPDSKWTMLTTTIFLHCID 442
E+ EE+ LE+C L NL DS + + TI C+D
Sbjct: 27 ESSAEEVDIFLENCSSLYNLILDSLHNLTSKTISCECLD 65
>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
Length = 1041
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 558 EAVIEELKDQLESCRQLLNLEPDSKWTMLTTTIFLHCID 442
E+ EE+ LE+C L NL DS + + TI C+D
Sbjct: 27 ESSAEEVDIFLENCSSLYNLILDSLHNLTSKTISCECLD 65
>AF040661-5|AAG24212.1| 209|Caenorhabditis elegans Hypothetical
protein W10G11.3 protein.
Length = 209
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -1
Query: 654 IDNGQKQIIQGVECKEMFY-IGKNQIKFE--RNYSEAVIEELKDQLESCRQLLNLEPDSK 484
+D ++ + +C E+F +G+N I+ + + E+ CRQ L+ +PD
Sbjct: 39 LDCTNPEVPETTKCLEIFKELGENIIRLDISNKTGPTKVIEICINFNRCRQTLDCQPDKV 98
Query: 483 WTMLTTTIFLHC 448
+ ++ T + C
Sbjct: 99 FAIVVNTGLMFC 110
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 753 EWVSCTGNCYDVLWIFQHSTPITKKINIKVEYEIDNGQK 637
E V +G D+ IF+ S T K N+ V Y ++NGQ+
Sbjct: 67 ESVVISGKKCDIRNIFEESDVATMKFNLFVWYFLENGQR 105
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 753 EWVSCTGNCYDVLWIFQHSTPITKKINIKVEYEIDNGQK 637
E V +G D+ IF+ S T K N+ V Y ++NGQ+
Sbjct: 67 ESVVISGKKCDIRNIFEESDVATMKFNLFVWYFLENGQR 105
>Z82274-9|CAB05232.2| 260|Caenorhabditis elegans Hypothetical
protein JC8.5 protein.
Length = 260
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 378 RAGYYDDLIAKWCIEKQLCSDYENADLALKFSFPSPVSSLPYLQYYSYCDSVDLS 214
+A YY + I +C E+Q+ + E DL + F + P L+ Y DS+ LS
Sbjct: 173 QAAYYFNKIQCFCFEEQILNPGEQVDLPVFFYIDPDYVNDPALE---YLDSILLS 224
>Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical
protein C44H4.1 protein.
Length = 586
Score = 28.3 bits (60), Expect = 6.8
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = -1
Query: 255 YLQYYSYCD--SVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLT-----TMKNFPDLDL 97
+L Y+S +DLS LT+ L+ L++ +LSL+ N L+ ++N P L+
Sbjct: 152 FLSYHSRDSLLKLDLSANNLTAIHPTGLLGLENLSQLSLDKNLLSEIPSQALENIPSLED 211
Query: 96 VELNLLGNEKLDRNEIEL 43
+ L + + RN + L
Sbjct: 212 LSLGVNRIHTISRNSLPL 229
>AF077534-7|AAK71376.1| 319|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 48
protein.
Length = 319
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 279 PSPVSSLPYLQYYSYCDSVDLSNQQLTSNIFPSLI 175
P+P+ +PYL Y SVD++N L + P L+
Sbjct: 277 PNPILEVPYLLINDYTPSVDMNN--LNVMLLPQLL 309
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 488 LSGSKFNSCLQDSSWSFNSSITASE 562
L SK N CLQ S +FN +I ASE
Sbjct: 216 LGDSKKNFCLQSVSKAFNYAIVASE 240
>U80029-19|AAB37598.1| 139|Caenorhabditis elegans Hypothetical
protein T20D4.19 protein.
Length = 139
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 630 IQGVECKEMFYIGKNQIKFERNYSEAVIEELKDQLESCRQLLN 502
++ ++C K +K +NY EAV+ + KD E +L N
Sbjct: 82 LETIQCGLETQSDKKNVKMIKNYCEAVVYDSKDFAECSEKLEN 124
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,101,997
Number of Sequences: 27780
Number of extensions: 382602
Number of successful extensions: 1220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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