Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g18r
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.62 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.62 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 153 LSLENNNLTTM--KNFPDLDLVELNLLGNEKLDRNEIELFTKKYNFNII 13
           L+L  N LT +  + F DL  +++  L N  +DR E   F   YN + +
Sbjct: 340 LNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTL 388



 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 171 LQHCKKLSLENNNLTTMKNFPDLDLVELNLL 79
           L H ++L L+NN +  + N   L L  L +L
Sbjct: 865 LSHLRELYLQNNLIGFIGNLTFLPLRSLEIL 895


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
 Frame = -1

Query: 420 AIQNLQKLKVIDKLRAGYYDDLIAKWC-IEKQLCSDYENADLALKFSFPSPVSSLPYLQY 244
           A QN+  +K +  +   +Y  ++     + K+ C  Y+N +L   +   +P   LPY   
Sbjct: 9   AFQNVVLVKKVKIVLLIFYGSIMFSMTQVNKEECDYYQNLNLGEIYYIYNPRYPLPYSG- 67

Query: 243 YSYCDSVDLSNQQLTSNIFPSLIVLQHCKKLSLENNNLTTMKNF 112
            S C     S  ++  N+  SL+     K  +    +LT  KNF
Sbjct: 68  -SKCTWTITSYHRI--NLKCSLVEFSENKNCNA--GSLTVKKNF 106


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 183 SLIVLQHCKKLSLENNNLTTMKNFPDLD 100
           +LI    C K + +NNN    KN   LD
Sbjct: 410 NLIKNTRCAKSNNQNNNQNKYKNQAHLD 437


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 744  SCTGNCYDVLWIFQHSTPITKKINIKVEYEID 649
            SC  N      +   STP+ KK+  + +Y +D
Sbjct: 920  SCVSNDGGCSSLVDVSTPVNKKVYKQNDYIVD 951


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,966
Number of Sequences: 438
Number of extensions: 4815
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)