Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12g18f
(608 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q921J9 Cluster: Rabggta protein; n=5; Euteleostomi|Rep:... 64 2e-09
UniRef50_Q92696 Cluster: Geranylgeranyl transferase type-2 subun... 64 2e-09
UniRef50_Q17NP5 Cluster: Rab geranylgeranyl transferase alpha su... 63 4e-09
UniRef50_Q9VN77 Cluster: CG12007-PA; n=2; Sophophora|Rep: CG1200... 62 1e-08
UniRef50_UPI0000D561D5 Cluster: PREDICTED: similar to Rab gerany... 54 4e-06
UniRef50_Q9TYY0 Cluster: Putative uncharacterized protein M57.2;... 52 8e-06
UniRef50_A7SL75 Cluster: Predicted protein; n=1; Nematostella ve... 50 6e-05
UniRef50_Q5BZ45 Cluster: SJCHGC04459 protein; n=1; Schistosoma j... 47 3e-04
UniRef50_Q6C601 Cluster: Yarrowia lipolytica chromosome E of str... 42 0.009
UniRef50_O94412 Cluster: Rab geranylgeranyltransferase; n=1; Sch... 41 0.026
UniRef50_A6QWC8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.061
UniRef50_Q5K762 Cluster: RAB-protein geranylgeranyltransferase, ... 39 0.11
UniRef50_Q5CIB7 Cluster: Rab geranylgeranyltransferase, alpha su... 38 0.14
UniRef50_UPI000065D014 Cluster: Protein prenyltransferase alpha ... 38 0.25
UniRef50_A1CWQ9 Cluster: Protein prenyltransferase alpha subunit... 38 0.25
UniRef50_Q08CA2 Cluster: LOC561820 protein; n=9; Euteleostomi|Re... 36 0.57
UniRef50_Q8IL46 Cluster: Protein prenyltransferase alpha subunit... 36 0.99
UniRef50_Q55DQ4 Cluster: Putative uncharacterized protein; n=1; ... 36 0.99
UniRef50_A5K3Y5 Cluster: Protein prenyltransferase alpha subunit... 36 0.99
UniRef50_UPI0000DB7CCD Cluster: PREDICTED: similar to Rab gerany... 35 1.7
UniRef50_O93829 Cluster: Geranylgeranyl transferase type-2 subun... 35 1.7
UniRef50_Q54RT9 Cluster: Putative uncharacterized protein; n=1; ... 34 2.3
UniRef50_Q4P3U2 Cluster: Putative uncharacterized protein; n=1; ... 34 2.3
UniRef50_A7NUL1 Cluster: Chromosome chr18 scaffold_1, whole geno... 34 3.0
UniRef50_Q7Z6K3 Cluster: Protein prenyltransferase alpha subunit... 34 3.0
UniRef50_Q4YXA5 Cluster: Protein prenyltransferase alpha subunit... 33 4.0
UniRef50_Q9VR31 Cluster: CG2976-PA; n=4; Endopterygota|Rep: CG29... 33 5.3
UniRef50_Q00618 Cluster: Geranylgeranyl transferase type-2 subun... 33 5.3
UniRef50_Q76L90 Cluster: Protein farnesyltransferase alpha subun... 33 7.0
UniRef50_Q96U26 Cluster: Related to geranylgeranyl transferase a... 33 7.0
UniRef50_Q6HW64 Cluster: TPR domain protein; n=10; Bacillus cere... 32 9.3
>UniRef50_Q921J9 Cluster: Rabggta protein; n=5; Euteleostomi|Rep:
Rabggta protein - Mus musculus (Mouse)
Length = 317
Score = 64.5 bits (150), Expect = 2e-09
Identities = 30/74 (40%), Positives = 43/74 (58%)
Frame = +3
Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
MHGR+KV+TS +++ A Q + KR+ LD+ +LELT +L +NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKREAGELDESVLELTSQILGANP 60
Query: 525 DIYTLWNIRRDILQ 566
D TLWN RR++LQ
Sbjct: 61 DFATLWNCRREVLQ 74
>UniRef50_Q92696 Cluster: Geranylgeranyl transferase type-2 subunit
alpha; n=30; Deuterostomia|Rep: Geranylgeranyl
transferase type-2 subunit alpha - Homo sapiens (Human)
Length = 567
Score = 64.5 bits (150), Expect = 2e-09
Identities = 30/74 (40%), Positives = 43/74 (58%)
Frame = +3
Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
MHGR+KV+TS +++ A Q + KR+ LD+ +LELT +L +NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 525 DIYTLWNIRRDILQ 566
D TLWN RR++LQ
Sbjct: 61 DFATLWNCRREVLQ 74
>UniRef50_Q17NP5 Cluster: Rab geranylgeranyl transferase alpha
subunit; n=2; Culicidae|Rep: Rab geranylgeranyl
transferase alpha subunit - Aedes aegypti (Yellowfever
mosquito)
Length = 532
Score = 63.3 bits (147), Expect = 4e-09
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +3
Query: 348 HGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPD 527
HGR+KVRTS F+ M +I +K+ LD+E+++LT +L++NPD
Sbjct: 1 HGRLKVRTSAEEAARKQKEREQKAKAFRAGMGRILMKKVTDELDEEMMQLTAKILAANPD 60
Query: 528 IYTLWNIRR----DILQLFKKAMIILKKC 602
+ TLWN+RR + +L +K +IL C
Sbjct: 61 VATLWNLRRRCILKLRRLTRKLRVILVFC 89
>UniRef50_Q9VN77 Cluster: CG12007-PA; n=2; Sophophora|Rep:
CG12007-PA - Drosophila melanogaster (Fruit fly)
Length = 515
Score = 61.7 bits (143), Expect = 1e-08
Identities = 31/71 (43%), Positives = 40/71 (56%)
Frame = +3
Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
MHGRVKVRT+ ++ AM +IQ KR+ LD E+L LT +L NP
Sbjct: 1 MHGRVKVRTTEEERERKKKEQALKVRAYRAAMGRIQKKREAGELDNEMLSLTVQILLRNP 60
Query: 525 DIYTLWNIRRD 557
D+ LWNIRR+
Sbjct: 61 DVSMLWNIRRE 71
>UniRef50_UPI0000D561D5 Cluster: PREDICTED: similar to Rab
geranylgeranyl transferase, a subunit; n=1; Tribolium
castaneum|Rep: PREDICTED: similar to Rab geranylgeranyl
transferase, a subunit - Tribolium castaneum
Length = 314
Score = 53.6 bits (123), Expect = 4e-06
Identities = 27/70 (38%), Positives = 37/70 (52%)
Frame = +3
Query: 348 HGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPD 527
HGR+KVRTS ++ M++I R + D L L+G +LS NPD
Sbjct: 6 HGRIKVRTSEEQKLQKQKEQQKKLVAYRMGMKQILSTRNKENYDPASLLLSGQLLSVNPD 65
Query: 528 IYTLWNIRRD 557
IYTLWN R++
Sbjct: 66 IYTLWNYRKE 75
>UniRef50_Q9TYY0 Cluster: Putative uncharacterized protein M57.2;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein M57.2 - Caenorhabditis elegans
Length = 580
Score = 52.4 bits (120), Expect = 8e-06
Identities = 29/79 (36%), Positives = 37/79 (46%)
Frame = +3
Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
MH KV T+ F H KI KR++ D E+L LT +L N
Sbjct: 1 MHFVKKVPTTEEEKAAKQKEHTKRSQQFLHVRDKIVAKREKGEYDDEILSLTQAILEKNA 60
Query: 525 DIYTLWNIRRDILQLFKKA 581
DIYT WNIRR ++L +A
Sbjct: 61 DIYTFWNIRRTTIELRMEA 79
>UniRef50_A7SL75 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 285
Score = 49.6 bits (113), Expect = 6e-05
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +3
Query: 423 IFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDI 560
+F QKI KR++ D+E L+LT +L NPD+ TLWN RR+I
Sbjct: 3 LFSDLDQKINKKREKREFDEEALDLTEQILGVNPDVSTLWNFRREI 48
>UniRef50_Q5BZ45 Cluster: SJCHGC04459 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC04459 protein - Schistosoma
japonicum (Blood fluke)
Length = 209
Score = 47.2 bits (107), Expect = 3e-04
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
MHGRVKV + F +K+ + R++ D+ LE +++ ++P
Sbjct: 21 MHGRVKVIQTAEQERARKLKKDQISKKFFEECEKLWVCREKENFDEMQLEKIDSLIETSP 80
Query: 525 DIYTLWNIRRDI-LQLFKK 578
D TLWN RR+I L LFKK
Sbjct: 81 DTATLWNYRREILLHLFKK 99
>UniRef50_Q6C601 Cluster: Yarrowia lipolytica chromosome E of strain
CLIB 122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome E of
strain CLIB 122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 347
Score = 42.3 bits (95), Expect = 0.009
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +3
Query: 459 RKECTLDKELLELTGNVLSSNPDIYTLWNIRRDILQ 566
R+E DKE L+L ++ NP+ YT+WN RR+IL+
Sbjct: 39 RREGKHDKEALDLNTKLIKINPEFYTMWNYRREILK 74
>UniRef50_O94412 Cluster: Rab geranylgeranyltransferase; n=1;
Schizosaccharomyces pombe|Rep: Rab
geranylgeranyltransferase - Schizosaccharomyces pombe
(Fission yeast)
Length = 344
Score = 40.7 bits (91), Expect = 0.026
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +3
Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
MHG ++V+ S ++ + + Q RK + L+LT +L NP
Sbjct: 1 MHGILRVKLSEEQRKLKAEKERAKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNP 60
Query: 525 DIYTLWNIRRDIL 563
+ Y++WN RR+IL
Sbjct: 61 ETYSVWNYRREIL 73
>UniRef50_A6QWC8 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 378
Score = 39.5 bits (88), Expect = 0.061
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 447 IQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDILQ-LFKKA 581
+ +R E E L T +L+ NP+ YT+WN RR ILQ F KA
Sbjct: 37 VNSQRAEHDFSTEALNKTSELLTKNPEYYTIWNTRRLILQHQFSKA 82
>UniRef50_Q5K762 Cluster: RAB-protein geranylgeranyltransferase,
putative; n=1; Filobasidiella neoformans|Rep:
RAB-protein geranylgeranyltransferase, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 330
Score = 38.7 bits (86), Expect = 0.11
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 435 AMQKIQIKRKECT-LDKELLELTGNVLSSNPDIYTLWNIRRDIL 563
A++K + RK +E L T +L NP+ YT+WN RRDIL
Sbjct: 30 ALEKDVLTRKSAKEYSEEALGKTTQLLDLNPEFYTIWNYRRDIL 73
>UniRef50_Q5CIB7 Cluster: Rab geranylgeranyltransferase, alpha
subunit isoform a; n=2; Cryptosporidium|Rep: Rab
geranylgeranyltransferase, alpha subunit isoform a -
Cryptosporidium hominis
Length = 567
Score = 38.3 bits (85), Expect = 0.14
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +3
Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
MHGRVK +F ++ I +K+ T + LELT +L N
Sbjct: 1 MHGRVKSEQKELTEEEKQYIERAKR-LFDECIELINQDQKKSTFSAKTLELTEKILKINT 59
Query: 525 DIYTLWNIRRDIL 563
++ T+WN R+ +
Sbjct: 60 EVATMWNFRKSYI 72
>UniRef50_UPI000065D014 Cluster: Protein prenyltransferase alpha
subunit repeat containing 1.; n=1; Takifugu
rubripes|Rep: Protein prenyltransferase alpha subunit
repeat containing 1. - Takifugu rubripes
Length = 430
Score = 37.5 bits (83), Expect = 0.25
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 456 KRKECTLDKE-LLELTGNVLSSNPDIYTLWNIRRDILQ 566
++++ LD+E L+++T +L NPD T WN+R+++LQ
Sbjct: 47 RQRKHWLDREALVDITSTLLLLNPDFTTAWNVRKELLQ 84
>UniRef50_A1CWQ9 Cluster: Protein prenyltransferase alpha subunit
repeat protein; n=7; Trichocomaceae|Rep: Protein
prenyltransferase alpha subunit repeat protein -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 364
Score = 37.5 bits (83), Expect = 0.25
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 483 ELLELTGNVLSSNPDIYTLWNIRRDILQ 566
E L+ +LSSNP+ YT+WN RR +LQ
Sbjct: 49 ETLQKISELLSSNPEYYTVWNYRRRVLQ 76
>UniRef50_Q08CA2 Cluster: LOC561820 protein; n=9; Euteleostomi|Rep:
LOC561820 protein - Danio rerio (Zebrafish) (Brachydanio
rerio)
Length = 431
Score = 36.3 bits (80), Expect = 0.57
Identities = 15/38 (39%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 456 KRKECTLDKE-LLELTGNVLSSNPDIYTLWNIRRDILQ 566
++++ LD+E L+++T +L NPD T WN+R+++LQ
Sbjct: 81 RQRKQWLDREALVDITCTLLLLNPDFTTAWNVRKELLQ 118
>UniRef50_Q8IL46 Cluster: Protein prenyltransferase alpha subunit,
putative; n=1; Plasmodium falciparum 3D7|Rep: Protein
prenyltransferase alpha subunit, putative - Plasmodium
falciparum (isolate 3D7)
Length = 563
Score = 35.5 bits (78), Expect = 0.99
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 456 KRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDILQLFKKAMIILKK 599
K+K DKE ++ T +L P + TLWN RR+ + K + KK
Sbjct: 33 KKKTNNYDKEYIDRTSLILMKCPYLQTLWNYRREYFEYIKPEYLKGKK 80
>UniRef50_Q55DQ4 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 335
Score = 35.5 bits (78), Expect = 0.99
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECT--LDKELLELTGNVLSS 518
MHG +KVRTS + ++ + R++ D+ L ++ VL
Sbjct: 1 MHGVLKVRTSEEKAKAQRLKELEKIESYNKLVKSFEELREKQNGRYDEISLSVSKLVLIE 60
Query: 519 NPDIYTLWNIRR 554
NP+ YT+WN RR
Sbjct: 61 NPEFYTIWNYRR 72
>UniRef50_A5K3Y5 Cluster: Protein prenyltransferase alpha subunit,
putative; n=1; Plasmodium vivax|Rep: Protein
prenyltransferase alpha subunit, putative - Plasmodium
vivax
Length = 534
Score = 35.5 bits (78), Expect = 0.99
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 456 KRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDILQ 566
K+ E + DKE +E T +L P + TLWN RR+ +
Sbjct: 32 KKNEKSYDKEYIETTSVILRRCPYLQTLWNFRREYFE 68
>UniRef50_UPI0000DB7CCD Cluster: PREDICTED: similar to Rab
geranylgeranyltransferase, alpha subunit, partial; n=1;
Apis mellifera|Rep: PREDICTED: similar to Rab
geranylgeranyltransferase, alpha subunit, partial - Apis
mellifera
Length = 91
Score = 34.7 bits (76), Expect = 1.7
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 495 LTGNVLSSNPDIYTLWNIRRD 557
+T ++ NPDIYTLWNIRR+
Sbjct: 2 VTERMVLQNPDIYTLWNIRRE 22
>UniRef50_O93829 Cluster: Geranylgeranyl transferase type-2 subunit
alpha; n=5; Saccharomycetales|Rep: Geranylgeranyl
transferase type-2 subunit alpha - Candida albicans
(Yeast)
Length = 371
Score = 34.7 bits (76), Expect = 1.7
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +3
Query: 450 QIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDIL 563
+++ E D+ L++ T +L NP+ YT+WN RR+IL
Sbjct: 38 ELRANENYSDEALIK-TNELLIINPEFYTIWNYRREIL 74
>UniRef50_Q54RT9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 322
Score = 34.3 bits (75), Expect = 2.3
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +3
Query: 423 IFKHAMQKIQ--IKRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDILQLFKK 578
+FK M + +K KE +L +L+L V+ NP YT+W RR++L+ ++
Sbjct: 42 VFKDKMNYFRAILKSKEKSL--RVLDLLEEVIQENPSNYTIWYYRREVLKAIEQ 93
>UniRef50_Q4P3U2 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 600
Score = 34.3 bits (75), Expect = 2.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 459 RKECTLDKELLELTGNVLSSNPDIYTLWNIRRDIL 563
++ D L T +L+ NP++YT+WN RR +L
Sbjct: 182 KRSARKDTTALHHTTKLLTLNPELYTVWNYRRQVL 216
>UniRef50_A7NUL1 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 696
Score = 33.9 bits (74), Expect = 3.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 480 KELLELTGNVLSSNPDIYTLWNIRR 554
KE LE++ +L +NP+ YT WN R+
Sbjct: 42 KEALEISAKLLEANPESYTAWNYRK 66
>UniRef50_Q7Z6K3 Cluster: Protein prenyltransferase alpha subunit
repeat-containing protein 1; n=28; Amniota|Rep: Protein
prenyltransferase alpha subunit repeat-containing
protein 1 - Homo sapiens (Human)
Length = 403
Score = 33.9 bits (74), Expect = 3.0
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 459 RKECTLDKELLELTGNVLSSNPDIYTLWNIRRDIL 563
RK+ EL+++T +L NPD T WN+R++++
Sbjct: 79 RKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELI 113
>UniRef50_Q4YXA5 Cluster: Protein prenyltransferase alpha subunit,
putative; n=3; Plasmodium (Vinckeia)|Rep: Protein
prenyltransferase alpha subunit, putative - Plasmodium
berghei
Length = 467
Score = 33.5 bits (73), Expect = 4.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 453 IKRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDILQLFK 575
IK+K +K+ ++++ +L P I TLWN R+ + K
Sbjct: 31 IKKKTSKYEKKYIQMSSTILRKCPYIQTLWNYRKKYFEFIK 71
>UniRef50_Q9VR31 Cluster: CG2976-PA; n=4; Endopterygota|Rep:
CG2976-PA - Drosophila melanogaster (Fruit fly)
Length = 331
Score = 33.1 bits (72), Expect = 5.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 489 LELTGNVLSSNPDIYTLWNIRRDILQLFK 575
L+LT + L NP YT+W RRD+L+ K
Sbjct: 68 LDLTTDALRLNPANYTVWQYRRDVLRELK 96
>UniRef50_Q00618 Cluster: Geranylgeranyl transferase type-2 subunit
alpha; n=6; Saccharomycetales|Rep: Geranylgeranyl
transferase type-2 subunit alpha - Saccharomyces
cerevisiae (Baker's yeast)
Length = 327
Score = 33.1 bits (72), Expect = 5.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 426 FKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDIL 563
++ + + R E E L+ T +L NP+ +WN RRDI+
Sbjct: 28 YRSLTENVLNMRDEKIYSIEALKKTSELLEKNPEFNAIWNYRRDII 73
>UniRef50_Q76L90 Cluster: Protein farnesyltransferase alpha subunit;
n=1; Entamoeba histolytica|Rep: Protein
farnesyltransferase alpha subunit - Entamoeba
histolytica
Length = 298
Score = 32.7 bits (71), Expect = 7.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 423 IFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDILQ 566
IFK M + + L + LE+TG V+ N Y+ W RR IL+
Sbjct: 35 IFKEVMGYYRALMAKGELSERALEITGKVIEMNSADYSAWYYRRRILK 82
>UniRef50_Q96U26 Cluster: Related to geranylgeranyl transferase
alpha chain; n=2; Sordariomycetes|Rep: Related to
geranylgeranyl transferase alpha chain - Neurospora
crassa
Length = 419
Score = 32.7 bits (71), Expect = 7.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 483 ELLELTGNVLSSNPDIYTLWNIRRDIL 563
++ LT +L NP+ YT+WN+RR L
Sbjct: 52 DVFALTSKLLRLNPEYYTVWNVRRRCL 78
>UniRef50_Q6HW64 Cluster: TPR domain protein; n=10; Bacillus cereus
group|Rep: TPR domain protein - Bacillus anthracis
Length = 304
Score = 32.3 bits (70), Expect = 9.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 477 DKELLELTGNVLSSNPDIYTLWNIRRDILQLFKK 578
D++ LEL G V+ NP Y +NI RDI KK
Sbjct: 50 DEKALELIGEVVKLNPSSYFPYNILRDIYMKQKK 83
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,481,551
Number of Sequences: 1657284
Number of extensions: 8072394
Number of successful extensions: 14688
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 14332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14683
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -