Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g18f
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.7  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   3.5  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   3.5  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   6.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.1  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.1  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +3

Query: 423 IFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDILQLFKKAMIILKKC 602
           I+   + ++  K KE  +DK  L     ++  NPD+  + ++ +++  L +K   +L++ 
Sbjct: 291 IYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSV-QEVEMLREKIYGVLEEY 349

Query: 603 HR 608
            R
Sbjct: 350 TR 351


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 115 TKAKFHYVCLVVWFI 71
           TK +   +CL+ WFI
Sbjct: 183 TKTRASLICLLAWFI 197


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 115 TKAKFHYVCLVVWFI 71
           TK +   +CL+ WFI
Sbjct: 183 TKTRASLICLLAWFI 197


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 476 KSAFFSLDLNFLHGMFENLQFFISLFLFPGFL 381
           KS  F  ++NF  G    L   + +++F GF+
Sbjct: 66  KSRVFYENVNFQFGSILALFGVVQIYIFSGFI 97


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 269 YL*LNKYIQRTTPFKFYRLKIQLS 340
           YL  + ++QR   +K+Y++   LS
Sbjct: 146 YLLFDYFVQRNQEYKYYQILSHLS 169


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 482 FIKSAFFSLDLNFLHGMFENLQFFISLFL 396
           F    FF+LD  F H M   L  ++ + +
Sbjct: 342 FTAKDFFNLDWTFCHMMIAALTTYLVILI 370


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 460 EKNALLIKNYW 492
           EKN LLI N W
Sbjct: 45  EKNQLLITNIW 55


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 460 EKNALLIKNYW 492
           EKN LLI N W
Sbjct: 45  EKNQLLITNIW 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,997
Number of Sequences: 336
Number of extensions: 2536
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)