Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g18f
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    40   3e-04
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    28   1.2  
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    27   1.6  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   2.8  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   2.8  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   5.0  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   6.5  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   8.7  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +3

Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
           MHG ++V+ S                 ++  + + Q  RK     +  L+LT  +L  NP
Sbjct: 1   MHGILRVKLSEEQRKLKAEKERAKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNP 60

Query: 525 DIYTLWNIRRDIL 563
           + Y++WN RR+IL
Sbjct: 61  ETYSVWNYRREIL 73


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 459 RKECTLDKELLELTGNVLSSNPDIYTLWNIRRDIL 563
           +KE +L    L LTG ++ +NP  YT+W  R  IL
Sbjct: 54  KKEYSL--RALNLTGFLIMNNPAHYTVWAYRFQIL 86


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 477 DKELLELTGNVLSSNPDIYTLWNIRRDILQLFKKAMIILKKC 602
           ++E L+    VL  N  +  +WNIR + +   +K   +L+KC
Sbjct: 113 NEEALKEIYRVLKPNGKLALIWNIRDNSVPWVEKCSQLLEKC 154


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 443 LHGMFENLQFFISLFLFPGFLFLRSSDFHSP 351
           L G+   L FFIS + FP F  L    + SP
Sbjct: 134 LTGLMSQLHFFISKWKFPNFSDLSKGFYISP 164


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 309 NGVVLCIYLFSYRYKIDFRVFLG 241
           N  V C+YL S+ Y I   +FLG
Sbjct: 885 NTKVFCLYLVSFSYSIISNLFLG 907


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 248 KTRKSILYL*LNKYIQRTTPFKFYRLKIQLSRDARESES 364
           KTRK +L + L+ Y +R + +  Y L   LSR    S +
Sbjct: 99  KTRKIVLEVVLDPYTERESKYHIYTLLEFLSRKLPSSST 137


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 423 IFKHAMQKIQIKRKECTLDKELLELTGNVLSSN 521
           +F+H  +K+++++KE     E+L++   +L SN
Sbjct: 571 LFQHVDEKLRLEKKEQLSYLEILKVIEQMLESN 603


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 483 ELLELTGNVLSSNPDIYT 536
           EL E+  N + SNPDIY+
Sbjct: 161 ELREIVANQVLSNPDIYS 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,854
Number of Sequences: 5004
Number of extensions: 40349
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)