Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g18f
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614...    31   0.71 
09_04_0722 + 19729331-19729582,19730535-19730644,19730810-197309...    31   0.94 

>06_03_1119 +
           27760412-27760527,27760851-27761010,27761283-27761449,
           27761525-27761629,27762097-27762864,27762942-27763131,
           27763763-27763940,27764106-27764497
          Length = 691

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 471 TLDKELLELTGNVLSSNPDIYTLWNIRR 554
           T  KE L L+  +L  NP+ YT WN R+
Sbjct: 39  TYTKEALGLSFKLLEINPEAYTAWNYRK 66


>09_04_0722 +
           19729331-19729582,19730535-19730644,19730810-19730930,
           19731080-19731175,19731429-19731838,19732251-19732309,
           19733235-19733287,19733432-19733485
          Length = 384

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 489 LELTGNVLSSNPDIYTLWNIRRDILQ 566
           L LT  V+  NP  YT+W+ RR +L+
Sbjct: 69  LHLTAEVIDLNPGNYTVWHFRRLVLE 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,818,422
Number of Sequences: 37544
Number of extensions: 185908
Number of successful extensions: 251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)