Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g18f
         (608 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08200-1|CAA69382.1|  567|Homo sapiens rab geranylgeranyl transf...    64   3e-10
CR541797-1|CAG46596.1|  567|Homo sapiens RABGGTA protein.              64   3e-10
BC003093-1|AAH03093.1|  567|Homo sapiens Rab geranylgeranyltrans...    64   3e-10
BC053622-1|AAH53622.1|  403|Homo sapiens PTAR1 protein protein.        34   0.45 
AL162412-2|CAI10945.2|  312|Homo sapiens protein prenyltransfera...    34   0.45 

>Y08200-1|CAA69382.1|  567|Homo sapiens rab geranylgeranyl
           transferase protein.
          Length = 567

 Score = 64.5 bits (150), Expect = 3e-10
 Identities = 30/74 (40%), Positives = 43/74 (58%)
 Frame = +3

Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
           MHGR+KV+TS                +++ A Q +  KR+   LD+ +LELT  +L +NP
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 525 DIYTLWNIRRDILQ 566
           D  TLWN RR++LQ
Sbjct: 61  DFATLWNCRREVLQ 74


>CR541797-1|CAG46596.1|  567|Homo sapiens RABGGTA protein.
          Length = 567

 Score = 64.5 bits (150), Expect = 3e-10
 Identities = 30/74 (40%), Positives = 43/74 (58%)
 Frame = +3

Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
           MHGR+KV+TS                +++ A Q +  KR+   LD+ +LELT  +L +NP
Sbjct: 1   MHGRLKVKTSEVQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 525 DIYTLWNIRRDILQ 566
           D  TLWN RR++LQ
Sbjct: 61  DFATLWNCRREVLQ 74


>BC003093-1|AAH03093.1|  567|Homo sapiens Rab
           geranylgeranyltransferase, alpha subunit protein.
          Length = 567

 Score = 64.5 bits (150), Expect = 3e-10
 Identities = 30/74 (40%), Positives = 43/74 (58%)
 Frame = +3

Query: 345 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 524
           MHGR+KV+TS                +++ A Q +  KR+   LD+ +LELT  +L +NP
Sbjct: 1   MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60

Query: 525 DIYTLWNIRRDILQ 566
           D  TLWN RR++LQ
Sbjct: 61  DFATLWNCRREVLQ 74


>BC053622-1|AAH53622.1|  403|Homo sapiens PTAR1 protein protein.
          Length = 403

 Score = 33.9 bits (74), Expect = 0.45
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 459 RKECTLDKELLELTGNVLSSNPDIYTLWNIRRDIL 563
           RK+     EL+++T  +L  NPD  T WN+R++++
Sbjct: 79  RKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELI 113


>AL162412-2|CAI10945.2|  312|Homo sapiens protein prenyltransferase
           alpha subunit repeat containing 1 protein.
          Length = 312

 Score = 33.9 bits (74), Expect = 0.45
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 459 RKECTLDKELLELTGNVLSSNPDIYTLWNIRRDIL 563
           RK+     EL+++T  +L  NPD  T WN+R++++
Sbjct: 78  RKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELI 112


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,484,831
Number of Sequences: 237096
Number of extensions: 1195680
Number of successful extensions: 5095
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5095
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)