Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g18f
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    51   6e-07
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 24/52 (46%), Positives = 31/52 (59%)
 Frame = +3

Query: 426 FKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRRDILQLFKKA 581
           F H   KI  KR++   D E+L LT  +L  N DIYT WNIRR  ++L  +A
Sbjct: 28  FLHVRDKIVAKREKGEYDDEILSLTQAILEKNADIYTFWNIRRTTIELRMEA 79


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 501 LSVPVILYQECILFS*FEFFAWHV*KSSIFHF 406
           L+ P I+++   LFS F FF +    +S FHF
Sbjct: 303 LTKPAIIFEAICLFSLFSFFNFITFSTSHFHF 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,909,650
Number of Sequences: 27780
Number of extensions: 218068
Number of successful extensions: 390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)