Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g18f
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 174 DYKITMLNYFSLICC*LLLIQKPNFIMYV 88
           D K+ +LN+   + C +++I   + IMY+
Sbjct: 389 DVKLVLLNFGWQMICLIVVIALVSIIMYI 417


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 462 KECTLDKELLELTGNVLSSNPD 527
           + C+  KEL +L+GN L+S PD
Sbjct: 428 RNCSDLKEL-DLSGNELTSVPD 448


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 505 MCYLLILTFTLYGI 546
           +C+L +L++T YG+
Sbjct: 279 ICFLYVLSWTPYGV 292


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 127 IVTDTKAKFHYVCLVVW 77
           + T TKA  HY   V+W
Sbjct: 119 VTTMTKAILHYTGKVLW 135


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 460 EKNALLIKNYW 492
           EKN LLI N W
Sbjct: 65  EKNQLLITNLW 75


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 424 FSNMPCKKFKSREKNALLIKNYWN 495
           +SN P   FK   K+ + +   WN
Sbjct: 674 WSNRPNLLFKDEAKDLVSVNKSWN 697


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 424 FSNMPCKKFKSREKNALLIKNYWN 495
           +SN P   FK   K+ + +   WN
Sbjct: 674 WSNRPNLLFKDEAKDLVSVNKSWN 697


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 424 FSNMPCKKFKSREKNALLIKNYWN 495
           +SN P   FK   K+ + +   WN
Sbjct: 674 WSNRPNLLFKDEAKDLVSVNKSWN 697


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,005
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)