Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g18f
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41820.1 68418.m05092 geranylgeranyl transferase alpha subuni...    30   1.0  
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    30   1.0  
At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative ...    27   9.7  

>At5g41820.1 68418.m05092 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 687

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 480 KELLELTGNVLSSNPDIYTLWN 545
           KE ++L+  +L +NP+ YT WN
Sbjct: 40  KEAIQLSAKLLITNPEFYTAWN 61


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 483 ELLELTGNVLSSNPDIYTLWNIRR 554
           E +EL+  +L  NP+ YT WN R+
Sbjct: 43  EAIELSTKLLEINPEAYTAWNYRK 66


>At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative
           (Crd1) similar to leucine-containing zipper protein
           At103 GP:6911864; contains Pfam profile PF05447: Copper
           response defect 1 (CRD1)
          Length = 409

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -3

Query: 261 DFRVFLGL*FILKERQQTFFKIVFTN*SSDYKITMLNYFSLICC*LLLIQKPNFIMY 91
           DF + L L F+ K R+ TFFK  F    + Y    + Y+  I     L + P F  Y
Sbjct: 188 DFNLALDLGFLTKARKYTFFKPKFIF-YATYLSEKIGYWRYITIYRHLKENPEFQCY 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,615,823
Number of Sequences: 28952
Number of extensions: 180680
Number of successful extensions: 269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)