Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g13r
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   1.3  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   1.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   3.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.0  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    21   9.3  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 78  YSDNTHAVQRSHRHNNVI*KCIEKV 4
           Y +N    Q S RHN  + KC  KV
Sbjct: 120 YRENKQGWQNSIRHNLSLNKCFVKV 144


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 677 WCAVFSDEDLVVLEYRDD 624
           W  VF D+  V  +Y+DD
Sbjct: 306 WTRVFDDQQKVPYKYKDD 323


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 338 CTVSGTQSYRVQLFVNEKATELCPLEGCTWQQFQQKFQPFASANLEFCSLDY 183
           CT+   + YRV+      A   CP     +   ++++ P   AN+    +DY
Sbjct: 584 CTLLLQRGYRVEYSAASDAFTHCPEGFNEFYNQRRRWMPSTMANILDLLMDY 635


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 338 CTVSGTQSYRVQLFVNEKATELCPLEGCTWQQFQQKFQPFASANLEFCSLDY 183
           CT+   + YRV+      A   CP     +   ++++ P   AN+    +DY
Sbjct: 817 CTLLLQRGYRVEYSAASDAFTHCPEGFNEFYNQRRRWMPSTMANILDLLMDY 868



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 149 WNSFSWALLLQTVLLLI 99
           W+SF W LL   V +L+
Sbjct: 917 WSSFYWNLLPIAVFILV 933



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 267  RTELGCLLVYEELDPVG 317
            + E+G  + Y +L+P+G
Sbjct: 1268 KNEIGVYITYLQLEPIG 1284


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 338 CTVSGTQSYRVQLFVNEKATELCPLEGCTWQQFQQKFQPFASANLEFCSLDY 183
           CT+   + YRV+      A   CP     +   ++++ P   AN+    +DY
Sbjct: 817 CTLLLQRGYRVEYSAASDAFTHCPEGFNEFYNQRRRWMPSTMANILDLLMDY 868



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 149 WNSFSWALLLQTVLLLI 99
           W+SF W LL   V +L+
Sbjct: 917 WSSFYWNLLPIAVFILV 933



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 267  RTELGCLLVYEELDPVG 317
            + E+G  + Y +L+P+G
Sbjct: 1268 KNEIGVYITYLQLEPIG 1284


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 251 WQQFQQKFQPFASANLEFCSLDYRVPETNAAPGGWNSFSWAL 126
           ++Q QQ++Q     +L F     +VP T   PG   SF W+L
Sbjct: 177 YRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGK-GSF-WSL 216


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 528 CCFEALIQVLHWKMTKVHI 584
           C F A+ ++  W  +KVHI
Sbjct: 207 CDFVAITKLEQWNHSKVHI 225


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 251 WQQFQQKFQP 222
           W+Q Q+KF P
Sbjct: 96  WEQLQKKFDP 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,188
Number of Sequences: 336
Number of extensions: 3097
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)