Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g13r
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    42   8e-05
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    37   0.002
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    37   0.003
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    28   1.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   7.7  

>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
 Frame = -3

Query: 677 WCAVFSDEDLVVLEYRDDVRHYHRNGYGSWVNVNLGHLPMKNLYESFEAAVEGRG-KKIT 501
           +C++F+  + +  EY  D+ + +  G  S     LG   + NL  +    V     +K+ 
Sbjct: 276 FCSLFTPSEFLNFEYDSDLDYAYWGGPASEWASTLGGAYVNNLANNLRKGVNNASDRKVF 335

Query: 500 SYFSHDTMMEMVWCALGIYKD---DFELQGGRRELNRLWRTSYIGAFSVNLIAVLNKCTV 330
             F+HD+ +  V  ALG + D   +  L   +       +TS    F+ NLI  L  C+ 
Sbjct: 336 LAFTHDSQIIPVEAALGFFPDITPEHPLPTDKNIFTYSLKTSSFVPFAGNLITELFLCS- 394

Query: 329 SGTQSYRVQLFVNEKATELCPLEGC 255
                Y V+  VN+   ++ PL  C
Sbjct: 395 --DNKYYVRHLVNQ---QVYPLTDC 414


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
 Frame = -3

Query: 677 WCAVFSDEDLVVLEYRDDVRHYHRNGYG-SWVNVNLGHLPMKNLYESFEAAVEGRGKKIT 501
           +C +F+  D +  EY  D+   +  G    W ++  G     +L  S  + VE   +++ 
Sbjct: 268 FCKLFNSVDFLNFEYEGDLSFSYGMGNSVKWGSI-FGGAYANSLANSLRS-VENNTQQVF 325

Query: 500 SYFSHDTMMEMVWCALGIYKD---DFELQGGRRELNRLWRTSYIGAFSVNLIAVLNKCTV 330
             F+HD  +  V  ALG + D   +  L    +  +   + S    F+ NLI  L +C  
Sbjct: 326 FAFTHDANIIPVETALGFFTDNTPENPLPTSYQVHSHSMKASEFVPFAGNLITELFQCED 385

Query: 329 SGTQSYRVQLFVNEKATELCPLEGC 255
           S    Y V+  VNE   E+ PL  C
Sbjct: 386 S---KYYVRHLVNE---EVFPLSDC 404


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 5/140 (3%)
 Frame = -3

Query: 677 WCAVFSDEDLVVLEYRDDVRHYHRNG-YGSWVNVNLGHLPMKNLYESFEAAVE-GRGKKI 504
           +C++F+  + +  EY  D+   +  G    W +  LG   + NL +S          +K+
Sbjct: 276 FCSIFTPSEFLNFEYDSDLDQAYGGGPVSEWAS-TLGGAYINNLADSLRNVTNPDFDRKV 334

Query: 503 TSYFSHDTMMEMVWCALGIYKD---DFELQGGRRELNRLWRTSYIGAFSVNLIAVLNKCT 333
              F+HD+ +  V  ALG + D      L   +       +TS    F+ NLI  L  C+
Sbjct: 335 FLAFTHDSNIIPVEAALGFFPDITPQNPLPTDKNIYTYSQKTSSFVPFAGNLITELFFCS 394

Query: 332 VSGTQSYRVQLFVNEKATEL 273
            S    Y V+  VN++   L
Sbjct: 395 DS---KYYVRHLVNQQVYPL 411


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -3

Query: 677 WCAVFSDEDLVVLEYRDDVRHYHRNGYGSWVNVNLGHLPM----KNLYESFEAAVEGRGK 510
           W +   +E L ++   +D   ++RNG    VN  L  L      K   ++F  A+EG GK
Sbjct: 309 WKSEHPEEFLKIIHKVED---FYRNGTLKTVNTELVSLKEDADEKTFLDTFLNAIEGHGK 365

Query: 509 KITSY 495
           KI  +
Sbjct: 366 KIIKF 370


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 266 LEGCTWQQFQQKFQPFASANLEFC 195
           LE CTW + Q+  +     +L+FC
Sbjct: 822 LENCTWAKAQRMKREQVECDLDFC 845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,046
Number of Sequences: 5004
Number of extensions: 52917
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)