Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g13r
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0463 + 34121421-34121560,34121728-34121812,34122129-341224...    46   2e-05
08_02_1602 - 28148255-28149413,28151927-28152087                       31   0.84 
04_04_0414 - 25035026-25035600,25035658-25035739,25035868-250359...    29   3.4  
05_03_0592 + 15909437-15911002                                         29   4.5  
09_04_0369 - 17009308-17009501,17009528-17009714,17009802-170101...    28   6.0  
09_04_0211 - 15656614-15657186                                         28   6.0  
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901...    28   6.0  
08_02_0230 - 14572854-14574632                                         28   7.9  

>03_06_0463 +
           34121421-34121560,34121728-34121812,34122129-34122428,
           34123194-34123352,34123852-34123992,34124078-34124134,
           34124534-34124672,34124954-34125058,34125159-34125376,
           34125980-34126021,34126136-34126309
          Length = 519

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 30/178 (16%)
 Frame = -3

Query: 674 CAVFSDEDLVVLEYRDDVRHYHRNGYGSWVNVNLGHLPMKNLYESFEAAV--------EG 519
           C +F++ ++  LE+ DD+  +   GYG  +N  +G   +K++ +S E A+        +G
Sbjct: 287 CQLFNEAEVYFLEWTDDLEGFVLKGYGESINYRMGLPLLKDVVQSMEEAIVAKEENHPDG 346

Query: 518 RGKKITSYFSHDTMMEMVWCALGIYKDDFELQGGRRE----------LNRLWRTSYIGAF 369
             +K    F+H   +    C LG++ +  +    +RE            R W+ S +  F
Sbjct: 347 TYEKARLRFAHAETVVPFSCLLGLFLEGSDFAKIQREESLDIPPVPPQGRNWKGSVVAPF 406

Query: 368 SVNLIAVLNKC-------TVSGTQ--SYRVQLFVNEKATEL--C-PLEGCTWQQFQQK 231
           + N +  L +C        +S  Q  SY VQ+  NE    +  C   + C +++F++K
Sbjct: 407 AGNNMLALYQCPGKTDGGKISRDQKSSYFVQVIHNEAPVSMPGCGNKDFCPFEEFKEK 464


>08_02_1602 - 28148255-28149413,28151927-28152087
          Length = 439

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 272 CPLEGCTWQQFQQKFQPFAS 213
           CP EGC W +   KFQP  S
Sbjct: 314 CPQEGCRWNRRHAKFQPLKS 333


>04_04_0414 -
           25035026-25035600,25035658-25035739,25035868-25035906,
           25037121-25037216
          Length = 263

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -3

Query: 413 RELNRLWRTSYIGAFSVNLIAVLNKCTVSGTQSYRVQL--FVNEKATE 276
           R+LNRLW  +   A  + +  ++++   S T S +++L  +++ KA E
Sbjct: 14  RKLNRLWEDAKRAACKITMAGIMDEENASSTNSIKLELRIYMHCKACE 61


>05_03_0592 + 15909437-15911002
          Length = 521

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 202 SRLADAKGWNFCWNCCQVQPSR 267
           S LAD   W FCW+C   Q  R
Sbjct: 388 SSLADYLRWMFCWSCALAQEVR 409


>09_04_0369 -
           17009308-17009501,17009528-17009714,17009802-17010167,
           17010341-17010450,17012422-17012656
          Length = 363

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 144 VPPTGRGVRLGDPVVQAAELQVG 212
           VP  G G    DPVV  AE+QVG
Sbjct: 62  VPTRGHGFLSDDPVVLGAEIQVG 84


>09_04_0211 - 15656614-15657186
          Length = 190

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 483 HHDGDGVVCSGHLQRRLRTARGPPRTEPSLEN*LHRSF 370
           HH G    C  H +R  ++A  P R++PS    +H  +
Sbjct: 151 HHSGREGACHRHHRRSGKSAPSPERSKPSSGTSIHAGY 188


>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
            39490623-39491432,39491738-39493035
          Length = 1205

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 353  AVLNKCTVSG-TQSYRVQLFVNEKATELCPLEGCTWQQFQQKF 228
            AV   C + G + S+R +  ++   +++CP++GC  + F  K+
Sbjct: 1083 AVEYSCDIEGCSMSFRTKRDLSLHKSDICPVKGCGKKFFSHKY 1125


>08_02_0230 - 14572854-14574632
          Length = 592

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 389 FSRDGSVLGGPLAVRSRLCRCPE 457
           F+ DG +     AV   LCRCPE
Sbjct: 374 FAMDGGLSAAATAVGDMLCRCPE 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,411,504
Number of Sequences: 37544
Number of extensions: 377567
Number of successful extensions: 1074
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)