Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g13r
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)       81   8e-16
SB_38343| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.4e-40)       71   9e-13
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)          29   4.6  
SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)                   28   8.0  
SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        28   8.0  

>SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)
          Length = 448

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
 Frame = -3

Query: 677 WCAVFSDEDLVVLEYRDDVRHYHRNGYGSWVNVNLGHLPMKNLYESFEAAV--EGRGKKI 504
           WC+VF   DL VLEY  D++HY + GYG  +   +  + +KN+  + + AV  + +   I
Sbjct: 271 WCSVFRPSDLDVLEYFYDLKHYWKRGYGYKITYEISCVLLKNIINTIKTAVLSDNKNGPI 330

Query: 503 TSY-FSHDTMMEMVWCALGIYKDDFELQGG--RRELNRLWRTSYIGAFSVNLIAVLNKCT 333
            ++ F+H   ++ +   LG++KD+  L+     R  NR +R S I  F  N+   +  C 
Sbjct: 331 GNFMFAHAETIQPLNALLGLFKDEMPLRADNYHRHKNRKYRASQISPFGANIAFTVYNC- 389

Query: 332 VSGTQSYRVQLFVNEKATELCPLEG--CTWQQFQQKF-QPFASANLE-FCSLD 186
            SG   Y++Q+  NEK   L   EG  C  Q+F   F + +   +L+  C LD
Sbjct: 390 -SGL--YQLQVLSNEKIVSLPCCEGPRCPLQRFFDCFSEVYNMCDLKALCELD 439


>SB_38343| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.4e-40)
          Length = 456

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
 Frame = -3

Query: 677 WCAVFSDEDLVVLEYRDDVRHYHRNGYGSWVNVNLGHLPMKNLYESFEAAVEGRGKKITS 498
           WC++F +EDL VLEY  D+  Y+ +GYG  +        +  + ++ ++  + +      
Sbjct: 260 WCSLFEEEDLNVLEYYLDMWQYYEHGYGHEITYKSICPLVAEIAQTIKSFTKKKIPNGIF 319

Query: 497 YFSHDTMMEMVWCALGIYKDDFELQGG--RRELNRLWRTSYIGAFSVNLIAVLNKCTVSG 324
            F+H   +  +   L +Y+D   L  G   +  NR +R +     S N+  VL++C    
Sbjct: 320 RFAHSGGIISLQSILSLYRDPIPLTAGNYHKLSNRTFRIARNAPMSSNIAFVLHEC---- 375

Query: 323 TQSYRVQLFVNEKATEL--CPLEGCTWQQFQQKFQPFAS-ANLE-FCSLDYRVPETNA 162
           T  Y+VQ+ VNE+ T L  C    C   +F + ++   S  +LE  C LD   P+++A
Sbjct: 376 TDGYKVQVLVNERLTVLPCCKSAVCKLDKFLECYEAIGSNCDLEKMCKLDLPNPKSDA 433


>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
          Length = 1170

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 513 KEDNLIFQPRHHDGDGVVCSGHLQRRLRTARGPPRTEPSLEN*LHRSFLC 364
           KED         DG  VV  GHL +R  + R       S    ++RSFLC
Sbjct: 563 KEDGTFIPVPFIDGTLVVNIGHLMQRWTSDRLKANVSLSQTGRIYRSFLC 612


>SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)
          Length = 1709

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = -3

Query: 617 HYHRNGYGSWVNVNLGHLP-MKNLYESFEAAVEGRGKKITSYFSHDTMMEMVWCALGIYK 441
           HY  N     + +    LP +KN +  +E  +   GKK+    + D+  ++  C  G+Y 
Sbjct: 669 HYVPNDVKKELVLKAQDLPALKNNFV-YECVLSVEGKKLKVGATRDSDSQLS-CHSGVYT 726

Query: 440 DDFELQGGRRELNRLWRTSYIGAFSVNLIAVLNKCTVSGT 321
            +   Q     L  LWR + +     +L  +L KC V+ T
Sbjct: 727 YNAATQTVHMGLEVLWRGTDLVYKPESLKVLLYKCEVAYT 766


>SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 590 RIHIRSYGSALRRPCTPELPGLHQRIQ 670
           R+     G ALR  C P +PG H  IQ
Sbjct: 401 RVRTVGQGQALRVQCNPPIPGRHIAIQ 427


>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = -3

Query: 359 LIAVLNKCTVSGTQSYRVQLFVNEKATELCPLEGCTWQQFQQKFQPFASANLEFCSLD 186
           L  +L +   S   ++R +  +   ++   P+E   +    +K Q F + N+E C  D
Sbjct: 116 LSRLLPRSATSRALTFRYRYILRTMSSSFPPVENGDFNSLPKKVQDFVTENVELCQPD 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,807,636
Number of Sequences: 59808
Number of extensions: 417677
Number of successful extensions: 1286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)