Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g13r
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66515-1|CAA91347.1|  218|Caenorhabditis elegans Hypothetical pr...    37   0.015
AC084197-36|AAG23464.2|  381|Caenorhabditis elegans Hypothetical...    30   1.3  
Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    29   4.1  
AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transpor...    28   5.4  
Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z22176-2|CAD91716.2|  650|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z66515-1|CAA91347.1|  218|Caenorhabditis elegans Hypothetical
           protein R53.2 protein.
          Length = 218

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +3

Query: 279 GCLLVYEELDPVGLSTGYSALI*NSNKVNRESSDVTSSPETV 404
           G L+V+E LD  G ST    L+ + NK + ES D +SSP  V
Sbjct: 8   GLLIVFEGLDRSGKSTQAKRLVESINKKSTESGDASSSPSAV 49


>AC084197-36|AAG23464.2|  381|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.24 protein.
          Length = 381

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 599 YGSWVNVNLGHLPMKNLYESFEAAVEGRGKKITSYFSHDTMMEMVWCALGIYKDDFELQG 420
           YG   N+  G+  ++NL +    A  G+G ++  Y SH  +   V   +G  KD+     
Sbjct: 251 YGPCGNLMAGYW-LQNLIDKVADANAGKGPQVIGYASHTEITLSVMKLMGYVKDELTTSA 309

Query: 419 G 417
           G
Sbjct: 310 G 310


>Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical
           protein R09H10.4 protein.
          Length = 877

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -3

Query: 653 DLVVLEYRDDVRHYHRNGYGSWVNVNLGHLPMKNLYESFEAAVEGRGKKITSYFSHD 483
           D  VL     V  + +N     +  NL +  M +L++SFE+  E  GKK + YF  D
Sbjct: 510 DQFVLPNYTTVNIFVQNPGNLTIQSNLDY--MNSLFDSFESYPECLGKKFSHYFVRD 564


>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = -3

Query: 668 VFSDEDLVVLEYRDDVRHYHRNGYGSWVNVNLGHLPMKNLYESFEAAVEGRGKKITSYFS 489
           +  D D    + R+ +    RNG  S VN  + + P   L+ +FE  +  + KK  +  S
Sbjct: 202 ISEDIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICLFRNFEEIIHEQVKKTFNKES 261

Query: 488 HDTMMEMVWCA 456
            +  M+  + A
Sbjct: 262 EEKRMQEAFVA 272


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = -3

Query: 668 VFSDEDLVVLEYRDDVRHYHRNGYGSWVNVNLGHLPMKNLYESFEAAVEGRGKKITSYFS 489
           +  D D    + R+ +    RNG  S VN  + + P   L+ +FE  +  + KK  +  S
Sbjct: 202 ISEDIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICLFRNFEEIIHEQVKKTFNKES 261

Query: 488 HDTMMEMVWCA 456
            +  M+  + A
Sbjct: 262 EEKRMQEAFVA 272


>AF000264-2|AAC71121.1|  761|Caenorhabditis elegans Half transporter
           (pgp related)protein 2 protein.
          Length = 761

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 158 PGGWNSFSWALLLQTVLLLIWKFIY 84
           PG W S  W++L   + +L+W F++
Sbjct: 106 PGLWFSVIWSILSGFIQVLVWYFVF 130


>Z50797-4|CAA90674.1|  339|Caenorhabditis elegans Hypothetical
           protein T22H6.3 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 215 SANLEFCSLDYRVPETNAAPGGWNSF 138
           S  + F S+ Y+ P+T+  P  WN F
Sbjct: 174 SHKVSFLSMMYKSPDTDTTPAHWNLF 199


>Z22176-2|CAD91716.2|  650|Caenorhabditis elegans Hypothetical
           protein ZK1098.2 protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 335 TVSGTQSYRVQLFVNEKATELCPLEGCTWQQFQQKFQPFAS-ANLEFC 195
           TVS   +  VQL V+ K   L PLE   W ++Q++F   +  A   FC
Sbjct: 560 TVSQEFNDYVQLVVSSKDATLAPLE--FWAKYQERFPRMSEIAAKNFC 605


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,251,727
Number of Sequences: 27780
Number of extensions: 310333
Number of successful extensions: 852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)