Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g13r
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09870.1 68414.m01111 histidine acid phosphatase family prote...    55   4e-08
At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein ...    32   0.40 
At1g17615.1 68414.m02177 disease resistance protein (TIR-NBS cla...    31   0.71 
At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS cla...    31   0.93 
At1g72950.1 68414.m08437 disease resistance protein (TIR-NBS cla...    28   6.6  
At1g23510.1 68414.m02953 expressed protein                             28   6.6  

>At1g09870.1 68414.m01111 histidine acid phosphatase family protein
           contains Pfam profile PF00328: Histidine acid
           phosphatase; similar to multiple inositol polyphosphate
           phosphatase (GI:4105496)[Mus musculus]; EST gb|R64758
           comes from this gene
          Length = 487

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
 Frame = -3

Query: 674 CAVFSDEDLVVLEYRDDVRHYHRNGYGSWVNVNLGHLPMKNLYESFEAAVEGRGKKIT-- 501
           C +F+  ++ +LE+ DD+  +   GYG+ +N  +G   ++++  S E A++ R +K+   
Sbjct: 273 CELFTPSEVALLEWTDDLEVFLLKGYGNSLNYKMGVPLLEDVLHSMEEAIKAREEKLPPG 332

Query: 500 SY------FSHDTMMEMVWCALGIYKDDFELQGGRRE----------LNRLWRTSYIGAF 369
           SY      F+H   +    C LG++ D  E +  ++E            R +R S +  F
Sbjct: 333 SYEKARLRFAHAETIVPFSCLLGLFLDGSEFEKIQKEKPLELPPQPPKTRDFRGSTMAPF 392

Query: 368 SVNLIAVLNKCTVSGTQSYRVQLFVNEKATELCPLEG---CTWQQFQQK 231
             N I VL  C    +  Y VQ+  NE    +   +G   C  + F+ K
Sbjct: 393 GGNNILVLYSCPAESSPKYFVQVLHNEHPIAVPGCDGKDFCPLEDFKAK 441


>At5g22890.1 68418.m02677 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 373

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 272 CPLEGCTWQQFQQKFQPFAS 213
           CP  GC W Q  +KFQP  S
Sbjct: 270 CPQHGCRWNQRHEKFQPLKS 289


>At1g17615.1 68414.m02177 disease resistance protein (TIR-NBS
           class), putative domain signature TIR exists, suggestive
           of a disease resistance protein.
          Length = 380

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 545 ESFEAAVEGRGKKITSYFSHDTMMEMVWCALGIYKDDFELQGGRR 411
           + F+  +  RGK     F      E++   +  +KDD ELQ GRR
Sbjct: 13  QKFDVFLSFRGKDTRRTFISFLYKELIEMGIRTFKDDVELQSGRR 57


>At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 380

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -3

Query: 539 FEAAVEGRGKKITSYFSHDTMMEMVWCALGIYKDDFELQGGRRELNRLWRTSYIGAFSVN 360
           ++  +  RG      F      E+V  ++  +KDD EL+ G+R  + L RT  +  F+V 
Sbjct: 9   YDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFAVV 68

Query: 359 LIA 351
           +++
Sbjct: 69  VVS 71


>At1g72950.1 68414.m08437 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -3

Query: 554 NLYESFEAAVEGRGKKITSYFSHDTMMEMVWCALGIYKDDFELQGGRRELNRLWRTSYIG 375
           N    F+  +  RG      F      E++   +  +KDD EL+ GRR    L R     
Sbjct: 6   NTLPKFDVFLSFRGLDTRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAIEGS 65

Query: 374 AFSVNLIAV 348
            F+V +++V
Sbjct: 66  RFAVVVVSV 74


>At1g23510.1 68414.m02953 expressed protein
          Length = 250

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 602 GYGSWVNVNLGHLPMKNLYESFEAAVEGRGKKITSYFSHDTMMEMV 465
           G+GSW+N N   LP K   E  E A      +  ++ + D M + +
Sbjct: 6   GFGSWINQNTQQLPHKAESERSENAKFKSKSETNTHEARDEMKQQL 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,342,208
Number of Sequences: 28952
Number of extensions: 287071
Number of successful extensions: 743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)