Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g13f
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.8  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.7  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 377 LPSTEQLRSRQCLDAQPPREPQPWEE 454
           LP+ E    R  + A  P++P  WE+
Sbjct: 30  LPTVEPGYLRPLIPATAPQKPDKWED 55


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +2

Query: 533 VCSGHRGIQEMDLERDPGGIAIFPHGHWLRGT 628
           VC G + + +++   +   + +  HG W RG+
Sbjct: 178 VCEGDKVVIDVENHIEGNEVTLHWHGVWQRGS 209


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +2

Query: 533 VCSGHRGIQEMDLERDPGGIAIFPHGHWLRGT 628
           VC G + + +++   +   + +  HG W RG+
Sbjct: 178 VCEGDKVVIDVENHIEGNEVTLHWHGVWQRGS 209


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 549 RCPEHTIDYCRRCN 508
           R  E TID C RC+
Sbjct: 226 RSDEQTIDICMRCH 239


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 420 LNRHGNRNPGKSVTVSVKEIADLKDEIINSYNA 518
           LNR  + NP    +    +I +L+ E I S +A
Sbjct: 499 LNRRRDENPRNYRSDEGPQITELEPETIESQDA 531


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 420 LNRHGNRNPGKSVTVSVKEIADLKDEIINSYNA 518
           LNR  + NP    +    +I +L+ E I S +A
Sbjct: 499 LNRRRDENPRNYRSDEGPQITELEPETIESQDA 531


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,912
Number of Sequences: 336
Number of extensions: 2305
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)