Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12g13f
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 41 1e-04
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 41 1e-04
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc... 34 0.020
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 33 0.047
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 28 1.3
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 26 4.0
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 4.0
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 25 7.1
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 25 9.3
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 41.1 bits (92), Expect = 1e-04
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +3
Query: 333 SSKTPYDTVRGDLRDYQVPNNCEAVSVWTLNRHGNRNP-GKSVTVSVKEIADLKDEIINS 509
+S++PY P C+ V TL RHG+RNP G + IA+ + ++N
Sbjct: 37 TSRSPYHKPYFYGPSIDFPTTCKIKQVHTLQRHGSRNPTGGNAAFDAVGIANFQQRLLNG 96
Query: 510 YNAGNSQLCAQDIEEFKKWTWNETLEVSQS-FLTGTGYEELYDIGK 644
+ + + TW +E + + L+ +G EL+D+G+
Sbjct: 97 SVPIDYSVSGNPLSFVP--TWTPVIEAANADALSSSGRVELFDMGR 140
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 41.1 bits (92), Expect = 1e-04
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Frame = +3
Query: 342 TPYDTVRGDLRDYQVPNNCEAVSVWTLNRHGNRNPGKSVTV----SVKEIADLKDEIINS 509
+PY D D P CE V L RHG+RNP VT S + + + +++++N
Sbjct: 40 SPYHEPYFDGLDSAFPETCEIQQVHLLQRHGSRNPTGDVTATDVYSSQYLNNFQEKLLNG 99
Query: 510 YNAGNSQLCAQDIEEFKKWTWNETLEVSQSFLTGTGYEELYDIGK 644
N + K+WT E + L+ G EL+D+G+
Sbjct: 100 SIPVNFSYPENPLCFIKQWTPVIDAENADQ-LSSRGRLELFDLGR 143
>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
Pho4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 463
Score = 33.9 bits (74), Expect = 0.020
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +3
Query: 387 PNNCEAVSVWTLNRHGNRNP---GKSVTVSVKEIADL-KDEIINSYNAGNSQLCAQDIEE 554
P +C V L RHG+RNP + VS + D+ +++++N N +
Sbjct: 55 PESCAIKQVHLLQRHGSRNPTGDDTATDVSSAQYIDIFQNKLLNGSIPVNFSYPENPLYF 114
Query: 555 FKKWTWNETLEVSQSFLTGTGYEELYDIGK 644
K WT E + L+ +G EL+D+G+
Sbjct: 115 VKHWTPVIKAENADQ-LSSSGRIELFDLGR 143
>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 481
Score = 32.7 bits (71), Expect = 0.047
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 330 YSSKTPYDTVRGDLRDY-QVPNNCEAVSVWTLNRHGNRNPGKSVTVSVKEIADLKDEIIN 506
Y K + T R L+ Y +P+ CE +S +N R S++V+ KEI LKD I++
Sbjct: 395 YGLKPTHVTYRSLLKAYCLLPSTCEQISQAWVNLE-YRLEAISISVADKEINLLKDCILS 453
Query: 507 SYNAGNSQLCAQ 542
+ + Q C Q
Sbjct: 454 QPDRDDQQSCLQ 465
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 1.3
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +3
Query: 387 PNNCEAVSVWTLNRHGNRNPGKSVTVSVKEIADLKD--EIINSYNAGNSQL-CAQDIEEF 557
P+N A++ WT N G + I D+KD ++ SY N L A+ E+
Sbjct: 288 PDNAIAMAPWTGNPKDKELVGLIPLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347
Query: 558 KK---WTWNETLEVSQSFLTG 611
+ WNE + SFL G
Sbjct: 348 RTKLIEDWNEKKKKGSSFLFG 368
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -2
Query: 623 LVTSAREERLRYLQGLVPSPFLEFLDVLSTQLTIAGVVTVNNFIFEVSYFFDADGYT 453
L+ S R+ERL L SPF+ L ++ + I G+ V N + +S A+G T
Sbjct: 327 LLISGRDERLTTLSATAASPFI--LALMDAK--IRGLPHVLNAVILISVLTAANGIT 379
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 444 PGKSVTVSVKEI-ADLKDEIINSYNAGNSQLCAQDI---EEFKKWTWNETLEVSQ 596
P S +S+ EI + K+EI + + + ++I EEF+KW E+L V +
Sbjct: 1229 PKNSQPLSISEIMTEQKEEIESQKRRSSFRKTIEEIQQEEEFQKWWEEESLRVQK 1283
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 576 ETLEVSQSFLTGTGYEELYDI 638
+T+ V+QSFL+ G E+ +D+
Sbjct: 420 KTISVAQSFLSQIGLEKFFDV 440
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 321 TDIQSSNSTLDSRWQHSTT 265
+D Q +S + +RWQHS+T
Sbjct: 303 SDEQEVSSMMGNRWQHSST 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,847
Number of Sequences: 5004
Number of extensions: 38627
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -