Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g13f
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)       32   0.46 
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   29   3.2  
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)                 29   4.3  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               29   4.3  

>SB_31215| Best HMM Match : Acid_phosphat_A (HMM E-Value=2.6e-26)
          Length = 448

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +3

Query: 321 YSLYSSKTPY--DTVRGDLRDYQVPNNCEAVSVWTLNRHGNRNPGKSVTVSVKEIADLKD 494
           Y  ++SKT Y    +  D++  +    C AV +  + RHG RNP K     ++   +  D
Sbjct: 23  YRNFASKTRYYEPNLEEDIKKER-EGGCSAVHMSLVARHGTRNPSKRDVKKIQRTTEAID 81

Query: 495 EIINSY 512
           ++ + +
Sbjct: 82  QLFSGH 87


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -2

Query: 560  LEFLDVLSTQLTIAGVVTVNNFIFEVSYFFDADGYTLXXXXXXXXXXXPNTDGFAIVRYL 381
            +E  D LS +    GVV+V   + +VSYF   D  +              TDG  I   +
Sbjct: 1405 MELDDALSVKAGANGVVSVGVHVADVSYFISKDS-SFDQAAFAQGTSAYPTDGSGIAVNM 1463

Query: 380  VISQIPSNC 354
            +  Q+   C
Sbjct: 1464 LPEQLRRLC 1472


>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
          Length = 2084

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 584  QGLVPSPFLEFLDVLSTQLTIAGVVTVNNFIFEVSYFF 471
            +GLVP+ F+E +     ++   G+ T +NF F VS  F
Sbjct: 1965 RGLVPASFVESVAESPRRVAFDGIQTADNFAFLVSRDF 2002


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 429 HGNRNPGKSVTVSVKEIADLKDEIINSYNAGNSQLCAQDIEEFKKWTWNETLEVSQSFLT 608
           HGNR   K  T   + I +L+D+  +S      ++ +    + K+ T  +  + ++ F+T
Sbjct: 793 HGNRESSKHETDRKETIPELRDDESSSSTDDRGEVESSASSDTKEGTMEKMEKKTEDFIT 852

Query: 609 G 611
           G
Sbjct: 853 G 853


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,371,545
Number of Sequences: 59808
Number of extensions: 279601
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)