Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g13f
         (645 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC027883-1|AAH27883.1|  366|Homo sapiens left-right determinatio...    30   8.1  
AY358873-1|AAQ89232.1|  366|Homo sapiens LEFTB protein.                30   8.1  
AL117348-3|CAI21799.1|  366|Homo sapiens left-right determinatio...    30   8.1  
AK222714-1|BAD96434.1|  366|Homo sapiens left-right determinatio...    30   8.1  
AF081512-1|AAD48144.1|  366|Homo sapiens TGF-beta type secreted ...    30   8.1  
AF081507-1|AAC33967.1|  366|Homo sapiens signaling molecule LEFT...    30   8.1  

>BC027883-1|AAH27883.1|  366|Homo sapiens left-right determination
           factor 1 protein.
          Length = 366

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 360 RGDLRDYQVPNNCEAVSVWTLNR-HGNRNPGKSVTVSVKEIA 482
           R D+ +  +P +  A  V  L R HG+R+ GK  + S +E+A
Sbjct: 45  RADMEELVIPTHVRAQYVALLQRSHGDRSRGKRFSQSFREVA 86


>AY358873-1|AAQ89232.1|  366|Homo sapiens LEFTB protein.
          Length = 366

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 360 RGDLRDYQVPNNCEAVSVWTLNR-HGNRNPGKSVTVSVKEIA 482
           R D+ +  +P +  A  V  L R HG+R+ GK  + S +E+A
Sbjct: 45  RADMEELVIPTHVRAQYVALLQRSHGDRSRGKRFSQSFREVA 86


>AL117348-3|CAI21799.1|  366|Homo sapiens left-right determination
           factor 1 protein.
          Length = 366

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 360 RGDLRDYQVPNNCEAVSVWTLNR-HGNRNPGKSVTVSVKEIA 482
           R D+ +  +P +  A  V  L R HG+R+ GK  + S +E+A
Sbjct: 45  RADMEELVIPTHVRAQYVALLQRSHGDRSRGKRFSQSFREVA 86


>AK222714-1|BAD96434.1|  366|Homo sapiens left-right determination,
           factor B preproprotein variant protein.
          Length = 366

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 360 RGDLRDYQVPNNCEAVSVWTLNR-HGNRNPGKSVTVSVKEIA 482
           R D+ +  +P +  A  V  L R HG+R+ GK  + S +E+A
Sbjct: 45  RADMEELVIPTHVRAQYVALLQRSHGDRSRGKRFSQSFREVA 86


>AF081512-1|AAD48144.1|  366|Homo sapiens TGF-beta type secreted
           signaling protein LEFTYB protein.
          Length = 366

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 360 RGDLRDYQVPNNCEAVSVWTLNR-HGNRNPGKSVTVSVKEIA 482
           R D+ +  +P +  A  V  L R HG+R+ GK  + S +E+A
Sbjct: 45  RADMEELVIPTHVRAQYVALLQRSHGDRSRGKRFSQSFREVA 86


>AF081507-1|AAC33967.1|  366|Homo sapiens signaling molecule LEFTY-B
           protein.
          Length = 366

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 360 RGDLRDYQVPNNCEAVSVWTLNR-HGNRNPGKSVTVSVKEIA 482
           R D+ +  +P +  A  V  L R HG+R+ GK  + S +E+A
Sbjct: 45  RADMEELVIPTHVRAQYVALLQRSHGDRSRGKRFSQSFREVA 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,732,448
Number of Sequences: 237096
Number of extensions: 1298048
Number of successful extensions: 6509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6509
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)