Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g13f
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09870.1 68414.m01111 histidine acid phosphatase family prote...    31   0.87 
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden...    29   3.5  
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa...    28   4.6  
At5g35170.1 68418.m04168 adenylate kinase family protein contain...    27   8.1  
At3g45420.1 68416.m04903 lectin protein kinase family protein co...    27   8.1  

>At1g09870.1 68414.m01111 histidine acid phosphatase family protein
           contains Pfam profile PF00328: Histidine acid
           phosphatase; similar to multiple inositol polyphosphate
           phosphatase (GI:4105496)[Mus musculus]; EST gb|R64758
           comes from this gene
          Length = 487

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = +3

Query: 342 TPYDTVRGDLRDYQVPNNCEAVSVWTLNRHGNRNPGKSVTVSVKEIADLKDEIINSYNAG 521
           T  D  +  +    VP+ C  + +  + RHG R+P K     ++ +A    E++    A 
Sbjct: 37  TSKDVTQNLIEGSNVPSECTPIHLNLVARHGTRSPTKKRLRELESLAGRFKELVRDAEA- 95

Query: 522 NSQLCAQDIEEF-KKWTWNETLEVSQSFLTGTGYEELYDIG 641
             +L +  I  +  +W      +V    L   G +ELY +G
Sbjct: 96  -RKLPSDKIPGWLGQWKSPWEGKVKGGELIRQGEDELYQLG 135


>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) identical
            to peroxisomal ABC transporter PXA1 GI:15320529 from
            [Arabidopsis thaliana]; contains Pfam profile PF00005:
            ABC transporter;
          Length = 1337

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 596  LRYLQGLVPSPFLEFLDVLSTQLTIAGVVTVNNFIFEVSYFFDA 465
            LRYL  +V   F+ F D+L        +    N IFE+  F DA
Sbjct: 1034 LRYLASVVSQSFMAFGDILELHKKFLELSGGINRIFELDEFLDA 1077


>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 508

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 501 INSYNAGNSQLCAQDIEEFKKWTWNETLEVSQS 599
           +N  N G+ Q C QD+E FK+   +E   +  S
Sbjct: 220 VNHINDGHEQQCDQDVEGFKEMEEDERNNIGTS 252


>At5g35170.1 68418.m04168 adenylate kinase family protein contains
           Pfam profile: PF00406 adenylate kinase
          Length = 588

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 274 VLPARVKSAIGTLNVRIACILQRPLMIQLEG 366
           V+P R   +  T N +I C +  PL + + G
Sbjct: 56  VIPRRTSRSFSTSNSQIRCSINEPLKVMISG 86


>At3g45420.1 68416.m04903 lectin protein kinase family protein
           contains Serine/Threonine protein kinases active-site
           signature, Prosite:PS00108
          Length = 667

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 402 LRNCSVLGNLSNPL*LYHKGSLKNTSYTDIQSSNSTLDSRW 280
           L+  S+L ++++ L   H G+     + DI++SN  LDS +
Sbjct: 446 LQRISILKDIASALNYLHSGANPAVLHRDIKASNVMLDSEY 486


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,290,630
Number of Sequences: 28952
Number of extensions: 193516
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)