Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g12r
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U80027-22|AAC48112.1|  336|Caenorhabditis elegans Seven tm recep...    28   4.1  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF047655-11|AAC04405.1|  336|Caenorhabditis elegans Seven tm rec...    27   5.5  
Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF100669-7|AAK39263.2|  549|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 112 PNLQLITVPSSRCVSEFYVHGVESDTAAEYPHGWRLRYSAFSGSNRGYPGTKRL 273
           P LQ+IT P    +S+     +  ++    P  W+ +YS F  S   Y GT+ L
Sbjct: 583 PPLQIITKPKVEVLSKMDFLQIMLNSVHSIPEHWQSQYSEFYMSLDLYHGTQVL 636


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 112 PNLQLITVPSSRCVSEFYVHGVESDTAAEYPHGWRLRYSAFSGSNRGYPGTKRL 273
           P LQ+IT P    +S+     +  ++    P  W+ +YS F  S   Y GT+ L
Sbjct: 583 PPLQIITKPKVEVLSKMDFLQIMLNSVHSIPEHWQSQYSEFYMSLDLYHGTQVL 636


>U80027-22|AAC48112.1|  336|Caenorhabditis elegans Seven tm receptor
           protein 64 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = +3

Query: 21  HNNNSEPLYFDIHCWL-------FMKATFEGCHLIIV 110
           HN  +  LYF  + WL       +M A + GCH +I+
Sbjct: 66  HNYKNSLLYFSCNTWLGSKTWLRYMLAMWSGCHTLII 102


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 158 NSMFTVLNPTPPLNTLTVGDCDIPLSLARIAV 253
           NS+F   +P  PL T  VG C  P S   I +
Sbjct: 183 NSLFPTPSPIRPLPTTKVGQCPSPTSNKSICI 214


>AF047655-11|AAC04405.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 63 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = +3

Query: 21  HNNNSEPLYFDIHCWL-------FMKATFEGCHLIIV 110
           HN  +  LYF  + WL       +M A + GCH +I+
Sbjct: 66  HNFKNSLLYFSCNTWLGSKTWLRYMLAMWSGCHTLII 102


>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = +3

Query: 9   RSCPHNNNSEPLYFDIHCWLFMK-------ATFEGCHLIIV 110
           R   HN N   ++F +  W+F K       AT+ G +L+IV
Sbjct: 62  RPFAHNYNKSVVFFSMSTWIFSKTFLQLLLATWAGLYLVIV 102


>AF100669-7|AAK39263.2|  549|Caenorhabditis elegans Hypothetical
           protein R11E3.1 protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 465 KMKLILFVLAVTAVVSANEEANVKSSRRSELNLG 364
           K  +IL V +     +  E+ N KS  +SELNLG
Sbjct: 118 KRDIILSVCSSERGGTETEQTNTKSDAKSELNLG 151


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -3

Query: 270 PFGTRITAIRARESGISQSPTVRVFSGGVGFNTVNIEFRNAPGRGYRYQLEIWGR*LSGN 91
           P   RIT+I      I  SP+  +   G+      I  R  P  GY +   ++   LS N
Sbjct: 323 PLQDRITSIELHNMAIKMSPSAAIGPDGI----AQIHIRKLPMCGYSFLAYLYNVSLSTN 378

Query: 90  L 88
           +
Sbjct: 379 I 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,138,634
Number of Sequences: 27780
Number of extensions: 223915
Number of successful extensions: 576
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)