Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g12r
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.57 
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    23   2.3  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    23   2.3  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    23   2.3  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    23   2.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.3  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    23   2.3  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    23   2.3  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.3  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    23   2.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.0  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.3  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   7.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.0  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = -2

Query: 274 GAVWYPDNRDSSQRKRNIAVSNREGIQRRC-RIQHREHRIQKRTGKRVPLSVGDLGTMIK 98
           GAVW  D  +  +R+   A S   G+  +   + H            +  ++GD      
Sbjct: 570 GAVWTVDEVEFYKRRPQRACSTTGGVPSKSPTLTHSPTMYGDALNANLQAALGD------ 623

Query: 97  WQPSNVAFINNQQCIS 50
              SN+ F+NN  C S
Sbjct: 624 ---SNMGFLNNSMCTS 636


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 21  HNNNSEPLYFDIH 59
           +NNN +PLY++I+
Sbjct: 94  YNNNYKPLYYNIN 106


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 21  HNNNSEPLYFDIH 59
           +NNN +PLY++I+
Sbjct: 94  YNNNYKPLYYNIN 106


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 21  HNNNSEPLYFDIH 59
           +NNN +PLY++I+
Sbjct: 94  YNNNYKPLYYNIN 106


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 21  HNNNSEPLYFDIH 59
           +NNN +PLY++I+
Sbjct: 94  YNNNYKPLYYNIN 106


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 204 RVFSGGVGFNTVNIEFRNAP 145
           ++ +G + FN VN    NAP
Sbjct: 382 KIANGDLNFNEVNFRILNAP 401


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 21  HNNNSEPLYFDIH 59
           +NNN +PLY++I+
Sbjct: 327 YNNNYKPLYYNIN 339


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 21  HNNNSEPLYFDIH 59
           +NNN +PLY++I+
Sbjct: 327 YNNNYKPLYYNIN 339


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 21  HNNNSEPLYFDIH 59
           +NNN +PLY++I+
Sbjct: 327 YNNNYKPLYYNIN 339


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 21  HNNNSEPLYFDIH 59
           +NNN +PLY++I+
Sbjct: 316 YNNNYKPLYYNIN 328


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 176 LNPTPPLNTLTVGDCDIPLSLARIAV 253
           L P P     TVG+CD   S+ RI V
Sbjct: 228 LRPYPNWEWHTVGNCDGLTSVFRIQV 253


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 21  HNNNSEPLYFDI 56
           +NNN +PLY++I
Sbjct: 327 YNNNYKPLYYNI 338


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 62  LVIYESNVRRLPLNHRPQISN 124
           L I ESNV+ LP+N    + N
Sbjct: 152 LEIVESNVQALPVNSLCSLDN 172


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 279  HQEPFGTRITAIRARESGISQ 217
            HQ+     +TA+RA+ S  SQ
Sbjct: 972  HQKKIMNSVTALRAQMSATSQ 992


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 154 KRTGKRVPLSVGDLGTMIKWQPSNVAFINNQ 62
           K+T K  P   GD+ ++    P+N   ++ +
Sbjct: 77  KKTDKHPPKDFGDVDSLGNLDPANEFIVSTR 107


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 394 FDVRLFVGRHYSRNSQHEQNK 456
           F+ R    RHY R  + E N+
Sbjct: 166 FEPRATDSRHYDRYKEEESNE 186


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 154 KRTGKRVPLSVGDLGTMIKWQPSNVAFINNQ 62
           K+T K  P   GD+ ++    P+N   ++ +
Sbjct: 93  KKTDKHPPKDFGDVDSLGNLDPANEFIVSTR 123


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +3

Query: 21  HNNNSEPLYFDIH 59
           +NNN +PL+++I+
Sbjct: 327 YNNNYKPLHYNIN 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,952
Number of Sequences: 438
Number of extensions: 2873
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)