Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g12f
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    28   1.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   3.1  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   7.1  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   7.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   9.4  

>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 347 RVPLSVGDLGTMIKWQPSNVAFINNQQCISKYKGSELLLWGHDL 478
           R  +S+ D    I++   NV    N+  +S    S++L+WGHD+
Sbjct: 206 RALVSMTDTEDAIEFMEKNVE--KNKSAMSNNITSDILVWGHDI 247


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -2

Query: 371 NLQLITVPSSRCVSEFYVHGVESDTAAEYPHGWR-LRYSAFSGSNRGYPGTKRLLVPKEI 195
           N+    + S RC      HG   D A+   +GW+ L  +A  GSN G   T+      + 
Sbjct: 363 NIPCTCMISGRCYITSQNHGYAVD-ASSLSNGWKELFVNANDGSNEGIYNTEYPFFSVQF 421

Query: 194 RPGRT 180
            P  T
Sbjct: 422 HPEST 426


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 110 FGSSRRFDVRLFVGRHYSRNSQHEQNKLHLAGL 12
           F   +RFD+ +F   HY +N   E+ K HL  +
Sbjct: 531 FLRKQRFDISIFDEGHYLKNRMSERYK-HLMNI 562


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 228 RITAIRARESGISQSPTVRVFSGGVGFNTVN 320
           R  AI  RESG+S  P  R  S   G NT N
Sbjct: 178 RAAAISKRESGVSSEPRARTSSLTPG-NTPN 207


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 311 VESDTAAEYPHGWRLRYS 258
           ++SD+  + P GW +RY+
Sbjct: 300 MQSDSGNDLPFGWEMRYT 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,767
Number of Sequences: 5004
Number of extensions: 44581
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)