Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g12f
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18598| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_14142| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_58731| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_33017| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_1715| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_18598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 212 GAVWYPDNRDSSQRKRN---IAVSNREGIQRRCRIQHREHRIQKRTGKRV-PLSVGDLGT 379
           GAV   DNR S  RKRN    A+ +R  +   C+    + R+Q +   RV      D+G+
Sbjct: 136 GAVGRYDNRQSFYRKRNYKRTAIMSRNSLAGCCKKTTDKDRMQHQAINRVLRKQYADMGS 195

Query: 380 M 382
           M
Sbjct: 196 M 196


>SB_14142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 236 RDSSQRKRNIAVSN---REGIQRRCRIQHREHRIQKR 337
           RD   R+R ++  N   REG+  +  +QHRE  I KR
Sbjct: 137 RDLQHRERFVSKRNLQHREGLISKRNLQHRERLISKR 173



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 233 NRDSSQRKRNIAVSNREGIQRRCRIQHREHRIQKR 337
           +R+    KRN+   +REG+  +  +QHRE  I KR
Sbjct: 9   HREGMISKRNL--QHREGMISKRNLQHREGMISKR 41



 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 233 NRDSSQRKRNIAVSNREGIQRRCRIQHREHRIQKR 337
           +R+    KRN+   +REG+  +  +QHRE  I KR
Sbjct: 21  HREGMISKRNL--QHREGMISKRNLQHREGMISKR 53


>SB_58731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 255 FLWLESRLSGYQTAPGAKRNKTRTYLT 175
           F W ES LSG +T+PG K  + + ++T
Sbjct: 397 FPW-ESSLSGIETSPGEKYGRYQNHIT 422


>SB_33017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +2

Query: 227 PDNRDSSQRKRNIAVSNREGIQRRCRIQHREHRIQKRTGKRVPLSVGDL----GTMIKWQ 394
           P N   S R R ++       Q R RI  +E R  KR  KR+   + D+    GT +K  
Sbjct: 28  PTNLVESARLRALSSRIETERQERYRILKKEERRMKRRKKRIDDRLDDIDKSRGTDLKLH 87

Query: 395 PSN 403
            SN
Sbjct: 88  KSN 90


>SB_1715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 355 RYPLPGAFLNSMFTVLNPTPPLNTLTVGDCDIPLSLARIA 236
           +Y L G F NS F   N  PP +       D+P  L+R++
Sbjct: 82  QYLLQGGFANSRFPFTNLPPPRDP-PRNSSDVPRDLSRVS 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,293,679
Number of Sequences: 59808
Number of extensions: 336918
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)