Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g12f
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U80027-22|AAC48112.1|  336|Caenorhabditis elegans Seven tm recep...    28   4.8  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF047655-11|AAC04405.1|  336|Caenorhabditis elegans Seven tm rec...    27   6.4  
Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF100669-7|AAK39263.2|  549|Caenorhabditis elegans Hypothetical ...    27   8.5  

>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 374 PNLQLITVPSSRCVSEFYVHGVESDTAAEYPHGWRLRYSAFSGSNRGYPGTKRL 213
           P LQ+IT P    +S+     +  ++    P  W+ +YS F  S   Y GT+ L
Sbjct: 583 PPLQIITKPKVEVLSKMDFLQIMLNSVHSIPEHWQSQYSEFYMSLDLYHGTQVL 636


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 374 PNLQLITVPSSRCVSEFYVHGVESDTAAEYPHGWRLRYSAFSGSNRGYPGTKRL 213
           P LQ+IT P    +S+     +  ++    P  W+ +YS F  S   Y GT+ L
Sbjct: 583 PPLQIITKPKVEVLSKMDFLQIMLNSVHSIPEHWQSQYSEFYMSLDLYHGTQVL 636


>U80027-22|AAC48112.1|  336|Caenorhabditis elegans Seven tm receptor
           protein 64 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = -1

Query: 465 HNNNSEPLYFDIHCWL-------FMKATFEGCHLIIV 376
           HN  +  LYF  + WL       +M A + GCH +I+
Sbjct: 66  HNYKNSLLYFSCNTWLGSKTWLRYMLAMWSGCHTLII 102


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 328 NSMFTVLNPTPPLNTLTVGDCDIPLSLARIAV 233
           NS+F   +P  PL T  VG C  P S   I +
Sbjct: 183 NSLFPTPSPIRPLPTTKVGQCPSPTSNKSICI 214


>AF047655-11|AAC04405.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 63 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = -1

Query: 465 HNNNSEPLYFDIHCWL-------FMKATFEGCHLIIV 376
           HN  +  LYF  + WL       +M A + GCH +I+
Sbjct: 66  HNFKNSLLYFSCNTWLGSKTWLRYMLAMWSGCHTLII 102


>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = -1

Query: 477 RSCPHNNNSEPLYFDIHCWLFMK-------ATFEGCHLIIV 376
           R   HN N   ++F +  W+F K       AT+ G +L+IV
Sbjct: 62  RPFAHNYNKSVVFFSMSTWIFSKTFLQLLLATWAGLYLVIV 102


>AF100669-7|AAK39263.2|  549|Caenorhabditis elegans Hypothetical
           protein R11E3.1 protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 21  KMKLILFVLAVTAVVSANEEANVKSSRRSELNLG 122
           K  +IL V +     +  E+ N KS  +SELNLG
Sbjct: 118 KRDIILSVCSSERGGTETEQTNTKSDAKSELNLG 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,936
Number of Sequences: 27780
Number of extensions: 248770
Number of successful extensions: 611
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)