Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g12f
         (534 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50370.1 68416.m05508 expressed protein                             29   2.6  
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    28   3.4  
At5g04885.1 68418.m00512 glycosyl hydrolase family 3 protein con...    27   5.9  
At2g34090.2 68415.m04174 expressed protein  similar to GP|130183...    27   5.9  
At2g34090.1 68415.m04173 expressed protein  similar to GP|130183...    27   5.9  

>At3g50370.1 68416.m05508 expressed protein
          Length = 2179

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 88   SNLLEDPN*TSASLVSKTVYYFVAMSPVRRQVRPGLISFG--TRSRLVP 228
            +N + + N TS S+V K   +  + SP+   +  G I FG  T S ++P
Sbjct: 1647 ANRISESNSTSTSVVPKNNTFSSSTSPINSLLAEGKIQFGAVTSSTVIP 1695


>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +2

Query: 218 VWYPDNRDSSQRKRNIAVSNREGIQRRCRIQHREHRIQKRTGKRVPLSVGD-LGTMIKWQ 394
           V  P N + +QR    +VSN     RR R    + + QK  GKR+ + + +   T  K  
Sbjct: 417 VHQPSNVNKTQRGDRGSVSNLSTTYRRRRASPPQAQPQKSIGKRLIMGIKNAFSTSSKQV 476

Query: 395 PSNVAFINNQQCISKYKGSELLLWGHD 475
           P   A+   +     Y G E  +W  D
Sbjct: 477 PKKNAYAVEE----IYDGLEDFVWIKD 499


>At5g04885.1 68418.m00512 glycosyl hydrolase family 3 protein
           contains Pfam profiles PF00933: Glycosyl hydrolase
           family 3 N terminal domain, PF01915: Glycosyl hydrolase
           family 3 C terminal domain
          Length = 665

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 353 VPSSRCVSEFYVHGVESDTAAEYPHGWRLRYSAFSGSNRGYPGTKRLLVPK 201
           +P  R  S+  V G  +D       GW + +  FSG N+   GT  L   K
Sbjct: 427 LPLPRKTSKILVAGTHADNLGYQCGGWTITWQGFSG-NKNTRGTTLLSAVK 476


>At2g34090.2 68415.m04174 expressed protein  similar to
           GP|1301832|gnl|PID|e239862|Z71287
          Length = 471

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 201 FWHQEPFGTRITAIRAR--ESGISQSPTVRVFSGGVGFNTVNIEFRNAPGR 347
           F  ++P     T++ A    S   + P++ VFSGG GFN V  E +    R
Sbjct: 26  FRSKKPHYYNSTSLMAECLSSSTVEPPSLLVFSGGTGFNGVVEELKKLTTR 76


>At2g34090.1 68415.m04173 expressed protein  similar to
           GP|1301832|gnl|PID|e239862|Z71287
          Length = 445

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 201 FWHQEPFGTRITAIRAR--ESGISQSPTVRVFSGGVGFNTVNIEFRNAPGR 347
           F  ++P     T++ A    S   + P++ VFSGG GFN V  E +    R
Sbjct: 26  FRSKKPHYYNSTSLMAECLSSSTVEPPSLLVFSGGTGFNGVVEELKKLTTR 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,430,620
Number of Sequences: 28952
Number of extensions: 233421
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)