Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g11r
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   6.9  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   6.9  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    26   6.9  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   9.1  

>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 114 SKVTKPVSSQTMHYYVEQISGILICNLGNSNNFTFFLHYKDHVKFVYR 257
           S+V    S + +HY +E ++GILI +L      T    +  H++ ++R
Sbjct: 223 SEVCSLYSGEALHYSLEDLNGILILHLQALIRDTKMNEFVGHLETLFR 270


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 590 KFIHKIIFLL*KTKNSFYDKNVTSYLALVFRLFR 691
           K I KII +     NSF   NVT++  ++F L R
Sbjct: 236 KNIQKIIKVYVDMLNSFISPNVTTFETVIFALCR 269


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 352 MKN*ILSYNPIRKISHIYDFVAPYILHHSYIQ 447
           ++N +LSY  +  IS+IY   A Y + H YIQ
Sbjct: 370 LQNFMLSYTALFLISYIYGPFAEYFVPH-YIQ 400


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 696 LNHDYAYHKTEHHRYQWCKCW 758
           L+ DYA  + E  R +WC  W
Sbjct: 333 LDLDYAIFQLEEWRKEWCHLW 353


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 117 KVTKPVSSQTMHYYVEQISGILICNLGNSNNFTFFLHYKDHVKFV 251
           ++ + VSS  +H Y+E  +  L    G S + TF    KD  K +
Sbjct: 264 EIRRKVSSDDVHNYLESCNNHLSMLTGPSEDITFSSLIKDIKKIL 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,579
Number of Sequences: 5004
Number of extensions: 60924
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)