Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g11r
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0315 + 14947450-14948284,14948439-14948540,14948656-149488...    36   0.027
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461...    29   4.1  
07_01_0477 - 3600592-3600598,3600799-3600861,3601584-3601639,360...    29   5.4  
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600...    28   9.5  

>01_03_0315 +
           14947450-14948284,14948439-14948540,14948656-14948840,
           14949444-14949654,14949816-14949999,14950108-14950258,
           14950371-14950679
          Length = 658

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -1

Query: 746 PLIPMVFCFMISIIMIEKGEKGE 678
           PL+ ++FCFM+SI+ I +G KGE
Sbjct: 292 PLLAILFCFMLSIVWIRRGRKGE 314


>02_05_1224 +
           35045268-35045270,35045735-35045863,35046037-35046180,
           35046306-35046451,35046583-35046739,35046838-35046896,
           35046978-35047137,35047716-35047865,35047969-35048105,
           35048186-35048332,35048428-35048540,35048880-35048971,
           35049637-35049738,35050108-35050145,35050255-35050381,
           35050462-35050632,35050721-35050852,35050929-35051038,
           35051118-35051178,35051386-35051427,35051756-35051933,
           35052043-35052248,35052843-35052962,35053138-35053182,
           35053310-35053408,35053846-35054058,35054254-35054393,
           35054469-35054583,35054684-35054722,35054816-35054899,
           35054969-35055139,35055891-35056100,35056193-35056378,
           35056473-35056601,35056679-35056749,35056834-35056933,
           35057016-35057072,35057778-35057834,35057940-35058020,
           35058256-35058338,35058448-35058562
          Length = 1572

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 301 LQALSNIHYTHNKFITIMKN*ILSYNPIRKISHIYD 408
           LQ L +  Y  N+  T   N +++ NP R++ H+YD
Sbjct: 79  LQNLKS-RYDMNEIYTYTGNILIAVNPFRRLPHLYD 113


>07_01_0477 -
           3600592-3600598,3600799-3600861,3601584-3601639,
           3602874-3603035
          Length = 95

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 381 DSENQSHLRLCRSLYITPFVYPAIIKNY 464
           D   +  +RLCR  Y  PF YP  I+ +
Sbjct: 41  DDATEPRVRLCRQEYPYPFTYPIWIRRF 68


>03_05_1124 +
           30559633-30559674,30559781-30559890,30559973-30560030,
           30560455-30560718,30560803-30560940,30561264-30561315,
           30561525-30561604,30561929-30561988,30562084-30562164,
           30562299-30562376,30563548-30563676,30563896-30564039,
           30564145-30564290,30564402-30564558,30564657-30564715,
           30564800-30564959,30565054-30565203,30565309-30565445,
           30565531-30565677,30565995-30566052,30566417-30566518,
           30566590-30566627,30566846-30566972,30567053-30567223,
           30567313-30567444,30567575-30567681,30567815-30567875,
           30567970-30568147,30568245-30568450,30568781-30568879,
           30569021-30569236,30569333-30569472,30569559-30569660,
           30569747-30569861,30570129-30570194,30570323-30570480,
           30570594-30570690,30570931-30571137,30571435-30571505,
           30571648-30571747,30571836-30571892,30571969-30572025,
           30572108-30572188,30572319-30572401,30572504-30572651
          Length = 1722

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 325 YTHNKFITIMKN*ILSYNPIRKISHIYD 408
           Y  N+  T   N +++ NP R++ H+YD
Sbjct: 406 YGINEIYTYTGNILIAVNPFRRLPHLYD 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,468
Number of Sequences: 37544
Number of extensions: 303867
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)