Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g11r
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical ...    30   1.6  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    29   4.9  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.1 protein.
          Length = 326

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 408 LCRSLYITPFVYPAIIKNYKFRYDIRFIMQVSCRYIIFKLSSLHDV 545
           +C  + I   V  +IIK +K RY I F M    RYI +   +++ V
Sbjct: 95  MCSGVLIALLVLVSIIKMFKNRYYILFSMHTCWRYIRYSFLTMNYV 140


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 363 NTKLQSDSENQSH-LRLCRSLYITPFVYPAIIKNYKFRYDIRFIMQVSCRYIIFKLSSLH 539
           N     +S+ ++H +R   +L  +     + I ++ F +   F    SC  I F++S + 
Sbjct: 578 NVLFTENSQKRNHKIRKKNALKTSNIQIFSKIASFFFEFFSDFCDSYSCLKIFFRISRIF 637

Query: 540 DVTHNR*IVTKSRLFIKSSFTK 605
              +N  ++  SR F+K    K
Sbjct: 638 TFFYNPNVLGNSRKFLKKEIIK 659


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 280  EVAKSMTLQALSNIHYTHNKFITIMKN 360
            +V KS+ LQA  NI  ++ + I +MKN
Sbjct: 7483 KVDKSLLLQAFENIRKSYKREIVVMKN 7509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,620,487
Number of Sequences: 27780
Number of extensions: 328645
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)