Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g11r
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.78 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.6  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 114 SKVTKPVSSQTMHYYVEQISGILICNLGNSNNFTFFLHYKDHV 242
           SK  K +SS + +Y     +     N  N NN+   L+YK+++
Sbjct: 309 SKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYI 351


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 450 IIKNYKFRYDIRFIMQVSCRYIIFK 524
           II+  +F  D+R   ++SC   IFK
Sbjct: 51  IIEILQFILDVRLDYRISCLLSIFK 75


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 450 IIKNYKFRYDIRFIMQVSCRYIIFK 524
           II+  +F  D+R   ++SC   IFK
Sbjct: 19  IIEILQFILDVRLDYRISCLLSIFK 43


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 196  GILTILPFFYITRIMLNLFIA 258
            GI + +PF+   ++ML L +A
Sbjct: 1600 GIASTVPFYADVKVMLPLIVA 1620


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 196  GILTILPFFYITRIMLNLFIA 258
            GI + +PF+   ++ML L +A
Sbjct: 1596 GIASTVPFYADVKVMLPLIVA 1616


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 138 SQTMHYYVEQISGILICN 191
           ++ MH+Y  +   +L+CN
Sbjct: 792 AKAMHHYPTREDNLLVCN 809


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,268
Number of Sequences: 438
Number of extensions: 4465
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)