Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g11r
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    29   3.4  
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    29   3.4  
At4g16015.1 68417.m02430 DC1 domain-containing protein contains ...    28   6.0  
At5g48310.1 68418.m05968 expressed protein                             28   7.9  

>At1g54560.1 68414.m06222 myosin, putative similar to myosin
           GI:433663 from [Arabidopsis thaliana]
          Length = 1529

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 319 IHYTHNKFITIMKN*ILSYNPIRKISHIYD 408
           I Y  N+  T   N +++ NP +++ HIYD
Sbjct: 87  IRYELNEIYTYTGNILIAINPFQRLPHIYD 116


>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
           myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
           thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 319 IHYTHNKFITIMKN*ILSYNPIRKISHIYD 408
           I Y  N+  T   N +++ NP +++ HIYD
Sbjct: 92  IRYELNEIYTYTGNILIAINPFQRLPHIYD 121


>At4g16015.1 68417.m02430 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 535

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 342 HYDYEKLNTKLQSDSENQSHLRLCRS 419
           H+ +EK N KLQ +S+  +   LC++
Sbjct: 252 HFSHEKHNLKLQEESDANNECMLCKA 277


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 453  IKNYKFRYDIRFIMQVSCRYIIFKLSSLHDVTHNR*IVTKSRLF 584
            IK+ +   ++R  M+  C  I   +S+LHDV  ++  V   RLF
Sbjct: 1033 IKDNEREVEVRERMKTLCLQITDSVSNLHDVFTSQIFVASCRLF 1076


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,090,576
Number of Sequences: 28952
Number of extensions: 280489
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)