Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g09r
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44729| Best HMM Match : SET (HMM E-Value=0)                         27   8.7  
SB_49486| Best HMM Match : MARVEL (HMM E-Value=1.6)                    27   8.7  

>SB_44729| Best HMM Match : SET (HMM E-Value=0)
          Length = 1112

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = -1

Query: 406  RHCFRVSGIRFKSSNVEINENEPVKFSTSRAASRGPVPLISKINDD 269
            ++C    G+R K+ N ++NE++    +  R   +   P + ++++D
Sbjct: 931  QNCSGFLGVRPKTQNAQMNEDKAKNAALKRRKRKPKKPAVKQVHED 976


>SB_49486| Best HMM Match : MARVEL (HMM E-Value=1.6)
          Length = 260

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -1

Query: 241 IGSVAIFMLYFCVLREESDI 182
           +GS+   ++Y+C+LRE +D+
Sbjct: 130 VGSIQSSLVYWCILRENTDV 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,922,122
Number of Sequences: 59808
Number of extensions: 272751
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)