Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g09r
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-5|AAA82425.1|  153|Caenorhabditis elegans Hypothetical pr...    31   0.47 
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr...    31   0.82 
U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U41264-5|AAA82425.1|  153|Caenorhabditis elegans Hypothetical
           protein F10E7.6 protein.
          Length = 153

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 241 IGSVAIFMLYFCVLREESDIDREFDKTLYDRIKGLEKEQLLQSYRYNKEHG 89
           IGS+   ++YF  LRE SD+D  +    +     LE++ L +  +  +E G
Sbjct: 65  IGSLIAIVIYFGWLREPSDLDEIWSAPPHILTSNLERKMLREQIKQAQEKG 115


>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
           protein F59A3.1 protein.
          Length = 1014

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 394 RVSGI-RFKSSNVEINENEPVKFSTSRAASRGPVPLISKINDDMPWYQPY 248
           R+S + R  +++V++N N P KF + R  S G  P    I   M W Q Y
Sbjct: 194 RISAMGRANANDVDLNRNFPTKFESHRETSGGSEPEKENI-AVMKWLQAY 242


>U80837-7|AAB37907.1|  760|Caenorhabditis elegans Hypothetical
           protein F07E5.8 protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 488 TIHSIESRL*VLHLTKLFYKLISFSVNLSNSKQLHN 595
           TI++++  +  +   K FYKL+  SV++  + ++H+
Sbjct: 165 TINTLKMAIATMEKLKPFYKLVEISVHVKKAAEMHD 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,303
Number of Sequences: 27780
Number of extensions: 220067
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)