BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV12g09r (598 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41264-5|AAA82425.1| 153|Caenorhabditis elegans Hypothetical pr... 31 0.47 U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr... 31 0.82 U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical pr... 28 5.8 >U41264-5|AAA82425.1| 153|Caenorhabditis elegans Hypothetical protein F10E7.6 protein. Length = 153 Score = 31.5 bits (68), Expect = 0.47 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = -1 Query: 241 IGSVAIFMLYFCVLREESDIDREFDKTLYDRIKGLEKEQLLQSYRYNKEHG 89 IGS+ ++YF LRE SD+D + + LE++ L + + +E G Sbjct: 65 IGSLIAIVIYFGWLREPSDLDEIWSAPPHILTSNLERKMLREQIKQAQEKG 115 >U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical protein F59A3.1 protein. Length = 1014 Score = 30.7 bits (66), Expect = 0.82 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -1 Query: 394 RVSGI-RFKSSNVEINENEPVKFSTSRAASRGPVPLISKINDDMPWYQPY 248 R+S + R +++V++N N P KF + R S G P I M W Q Y Sbjct: 194 RISAMGRANANDVDLNRNFPTKFESHRETSGGSEPEKENI-AVMKWLQAY 242 >U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical protein F07E5.8 protein. Length = 760 Score = 27.9 bits (59), Expect = 5.8 Identities = 10/36 (27%), Positives = 23/36 (63%) Frame = +2 Query: 488 TIHSIESRL*VLHLTKLFYKLISFSVNLSNSKQLHN 595 TI++++ + + K FYKL+ SV++ + ++H+ Sbjct: 165 TINTLKMAIATMEKLKPFYKLVEISVHVKKAAEMHD 200 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,611,303 Number of Sequences: 27780 Number of extensions: 220067 Number of successful extensions: 567 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 550 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 567 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1268802960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -