Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g09r
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03320.1 68418.m00283 protein kinase, putative similar to ser...    31   0.44 
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ...    29   3.1  
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ...    28   4.1  
At3g48470.1 68416.m05291 expressed protein                             28   5.4  
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ...    27   7.2  
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ...    27   7.2  
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ...    27   7.2  

>At5g03320.1 68418.m00283 protein kinase, putative similar to
           serine/threonine-protein kinase NAK [Arabidopsis
           thaliana] SWISS-PROT:P43293
          Length = 420

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 424 RNLNYLRH--CFRVSGIRFKSSNVEINENEPVKFSTSRAASRGPVPLISKINDDM 266
           R L YL     F++    FKSSN+ ++EN   K S    A  GP P  S ++ D+
Sbjct: 198 RGLTYLHEEMDFQIIFRDFKSSNILLDENWTAKLSDFGLARLGPSPGSSHVSTDV 252


>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 706

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 90  PCSLLYLYDWRSCSFSKP 143
           PCS  Y +DW  C F+ P
Sbjct: 267 PCSRAYSHDWTECPFAHP 284


>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 580

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 90  PCSLLYLYDWRSCSFSKP 143
           PCS  Y +DW  C+F  P
Sbjct: 221 PCSRAYSHDWTECAFVHP 238


>At3g48470.1 68416.m05291 expressed protein
          Length = 1017

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 295 PLISKINDDMPWYQP 251
           PLIS I+D  PWY P
Sbjct: 751 PLISNISDPQPWYLP 765


>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 607

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 90  PCSLLYLYDWRSCSFSKP 143
           PCS  Y +DW  C F  P
Sbjct: 219 PCSRAYSHDWTECPFVHP 236


>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 716

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 90  PCSLLYLYDWRSCSFSKP 143
           PCS  Y +DW  C F  P
Sbjct: 271 PCSRAYSHDWTECPFVHP 288


>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 597

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 90  PCSLLYLYDWRSCSFSKP 143
           PCS  Y +DW  C F  P
Sbjct: 224 PCSRAYSHDWTECPFVHP 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,524,694
Number of Sequences: 28952
Number of extensions: 191535
Number of successful extensions: 460
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)