Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g07r
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    50   3e-07
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    43   4e-05
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    39   6e-04
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    29   0.65 
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    29   0.86 
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   2.6  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    27   3.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   4.6  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.6  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   8.0  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   8.0  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 5/224 (2%)
 Frame = -1

Query: 696 SLRPEYNSKIIAMQAYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFT 517
           S+ P  N KI ++ A AP    +   NR++         ++A  S++    LFGR     
Sbjct: 233 SIHPLLNDKINSLIALAPAISPKGLHNRVVDAF------VKARPSILFF--LFGRKSILP 284

Query: 516 NLGM--RFCADGTFFQAM---CTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAH 352
           + G    F A   FF A+   C + LF ++ ++   +      V   H  +  +V+ + H
Sbjct: 285 SAGFWQSFLAP-KFFDAVLAYCLSQLFNWSCQNISSYQRL---VSFAHLYSYTSVKCLVH 340

Query: 351 YGQLINKNFFRRYDHGRLTNWRVYRSFTPPRYDLSLITAPVFLHYVDEDIFADVRDVRKL 172
           + Q++    FR YD+ +L +    + +   ++  + I  P++L +   D   D++ +  L
Sbjct: 341 WFQIMRSAEFRMYDNDQLGHDYFLKYYKAAKFPTNNIRTPIYLIWGGSDSLVDIQAM--L 398

Query: 171 HAELGRSVGMFRVPHATFSHLDFMWGSGAKDLLYDRTIQILRSL 40
           +A L   V   +V   ++ HLD +W    KD +    ++ LR +
Sbjct: 399 NA-LPAEVEHVKVD--SYEHLDMIWADTVKDYVIPPVLRRLRDI 439


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 46/217 (21%), Positives = 91/217 (41%), Gaps = 1/217 (0%)
 Frame = -1

Query: 696 SLRPEYNSKIIAMQAYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFT 517
           S+  E  + + A  A AP    +  + R +K I  HANS + L  + G N + G + F+ 
Sbjct: 225 SIDTELRNSVRAFIALAPAIAPKKYSGRTVKSII-HANS-QLLYLMFGRNSMLGSAVFWQ 282

Query: 516 NLGMRFCADGTFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLI 337
            +         F + +   + F  +   +++ + T   V   H  +  +V+   H+ Q+ 
Sbjct: 283 AV----LYPPVFAKIVDLFLRFFLSWTGKNI-SETQKIVAYSHLYSFTSVKCFVHWAQIT 337

Query: 336 NKNFFRRYDHGRLTNWRVYRSFTP-PRYDLSLITAPVFLHYVDEDIFADVRDVRKLHAEL 160
            +   + YD         Y +     RY +  I  P+ L Y   D   D+  ++     L
Sbjct: 338 RRKVLQMYDDSPGFKPSYYTNLNRIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPL 397

Query: 159 GRSVGMFRVPHATFSHLDFMWGSGAKDLLYDRTIQIL 49
            + +   ++P+  + HLD + G   KD++  + ++ L
Sbjct: 398 SQCI---QIPN--YEHLDIIMGDTKKDIVIQQVVEQL 429


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 9/229 (3%)
 Frame = -1

Query: 696 SLRPEYNSKI---IAMQ-AYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRS 529
           S+ P+ N K+   I +  AYAP  +  +  + ++K+      + + +  L G   L    
Sbjct: 221 SINPDLNDKVNIFIGLAPAYAPKGFSNYFVDYIVKV------NPKIMYHLFGRRCLLPSV 274

Query: 528 DFFTNLGMRFCADGTFFQAMCTNMLFAFAGRSEDMHNATMLPVKLG--HTPAGIAVRQIA 355
            F+ N+    C    F + +  ++   F   + D+ N ++     G  H  +  +V+ + 
Sbjct: 275 TFWQNI----CYPPIFVKIVDVSLKILF---NWDLSNISLNQKLCGYAHLYSFSSVKSVV 327

Query: 354 HYGQLINKNFFRRYDHGR-LTNWRVYRSFTPPRYDLSLITAPVFLHYVDEDIFADVRDVR 178
           H+ Q+I    F+ YD    L      R +  P +  + I  P+ + +  +D   ++  +R
Sbjct: 328 HWLQIIKNCTFQLYDDDMALLAGYGSRHYQVPLFPTNNIKCPMLILWGGKDTLINMEVMR 387

Query: 177 KLHAELGRSVGMFRVPHATFSHLDFMWGSGAKDLLYDRTIQILR--SLG 37
                  + V +     A + HLDF+WG   K+ ++   I  L+  SLG
Sbjct: 388 TALPPHAKEVSI-----AHYEHLDFLWGQDVKEEVFPVVIDALKHHSLG 431


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 259 SWRCETSVNPPICQASVIISSEEIFVDKLSVMCYLSNSNACRCMS*FHRQHSGIVH 426
           SW+ ++S +  +   SV +SS +  V  LSV       +    +S F ++H+ I+H
Sbjct: 65  SWKKDSSNSGKLDTVSVPMSSSDSDVLPLSVALQYGQGSGAALLSQFLKEHTRIIH 120


>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 392 PSFTGNIVALCMSSLRPAKANNIFVHIAWKNV 487
           P F  N+V  C S  R   A++I   + +KN+
Sbjct: 123 PVFEDNVVVYCRSGRRSTTASDILTKLGYKNI 154


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 495 ADGTFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPA 379
           A+G   +++C N+LFA    S+   N  +  VK   TPA
Sbjct: 859 AEGEIEESVCDNILFAINNLSQLNFNEKLKDVKDNLTPA 897


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 555 GINELFGRSDFFTNLGMRFCADGTFFQAMCTNML 454
           GI+E F  S    NLGM FCA     +++  N L
Sbjct: 244 GIHEEFVFSPRLDNLGMTFCASQALTKSLENNSL 277


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 654 AYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNLGMR 502
           +Y P   +  N N+       ++N  EA  S  GI+ +FG++DF   LG++
Sbjct: 37  SYKPAPRIRINNNKTKAQTTTNSN--EARQS--GISAMFGQNDFSNLLGLK 83


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 239  PPLFFYTMLTRTSLL-M*GMSENYMPN 162
            PP  +Y ML R SLL + G++ N  PN
Sbjct: 1116 PPFTYYLMLIRNSLLALFGLTNNDDPN 1142


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 210 EDIFADVRDVRKLHAELGRSVG 145
           ED+FAD   V+ LH  L R  G
Sbjct: 27  EDLFADFGPVKNLHLNLDRRTG 48


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 440 PAKANNIFVHIAWKNVPSAQNLIPKLVKKSDLPNSSFIPIRLVSASILLACGAMS 604
           P    N +   +W +  SA  L P L   SD P  S +P  +++ S L  C A++
Sbjct: 281 PFSPINPYYAKSWNHTASAPLLPPGLKNGSDYPYLS-VPPDILNDSYLAMCEAVN 334


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 149 TERPNSACSFLTSLTSAKMSSST*CRKTGAVMRDRSYLGGVKLL 280
           TERPNS  S L+S + +   SS+      + + ++S  G ++ +
Sbjct: 17  TERPNSKSSRLSSTSGSSHPSSSSRLTVRSAVPEKSAFGSIEFI 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,177
Number of Sequences: 5004
Number of extensions: 61498
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)