Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12g07r
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 70 2e-12
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 65 4e-11
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 44 2e-04
07_01_1124 + 10392909-10392974,10393037-10393455,10393503-103936... 29 3.6
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 29 4.8
01_06_1836 + 40228508-40230448 28 6.3
08_01_0397 - 3509186-3510291,3510322-3512335 28 8.3
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 28 8.3
02_04_0561 + 23879976-23879981,23880531-23882558,23882687-238827... 28 8.3
02_02_0146 - 7171656-7172044,7172383-7175008 28 8.3
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 70.1 bits (164), Expect = 2e-12
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 8/201 (3%)
Frame = -1
Query: 648 APVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNLGMRFCADGTFFQAM 469
+P+A+L+ ++ L + A EAL L G++E ++ +L C
Sbjct: 262 SPIAFLDKMSSPLARAAAD-VFLAEALYWL-GLSEFDPTGEYVHSLVTDICKQPGID--- 316
Query: 468 CTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINKNFFRRYDHGRL-TN 292
C N++ AF G + + N+++ V L H P A + + H Q+I +YD+G N
Sbjct: 317 CYNLMSAFTGDNCCLDNSSV-QVFLAHEPQATATKNMIHLAQMIRGGTIAKYDYGNAGDN 375
Query: 291 WRVYRSFTPPRYDLSLITA--PVFLHYVDEDIFADVRDVRKLHAELGRSVG----MFRVP 130
Y TPP YD++ I P+FL Y D +DV+DV +L LG+S V
Sbjct: 376 REHYGQATPPAYDVTAIPGDFPLFLSYGGRDSLSDVQDVSRLLRALGQSHSRDGDKLTVQ 435
Query: 129 H-ATFSHLDFMWGSGAKDLLY 70
+ A ++H DF+ A + +Y
Sbjct: 436 YLADYAHADFVMARNAGERVY 456
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 65.3 bits (152), Expect = 4e-11
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Frame = -1
Query: 342 LINKNFFRRYDHGRLTNWRVYRSFTPPRYDLSLI--TAPVFLHYVDEDIFADVRDVRKLH 169
+I K F +YD+G L N R Y PP +DLS I + P+++ Y D ADV DV++
Sbjct: 349 VIRKGTFAKYDYGLLGNLRRYGHLRPPAFDLSSIPESLPIWMGYGGLDALADVTDVQRTI 408
Query: 168 AELGRSVGMFRVPHATFSHLDFMWGSGAKDLLYDRTIQILRSLG 37
ELG + + + + H+DF+ AKD +Y I+ LR G
Sbjct: 409 RELGSTPELLYI--GDYGHIDFVMSVKAKDDVYVDLIRFLRENG 450
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = -1
Query: 282 YRSFTPPRYDLSLITA--PVFLHYVDEDIFADVRDVRKLHAEL---GRSVGMFRVPHAT- 121
Y PP YD++ I A P+FL Y D +D DV L +L G + V +
Sbjct: 331 YGQADPPAYDMAAIPAWFPIFLSYGGRDSLSDPADVALLLDDLRRGGHAGDRLTVQYLPQ 390
Query: 120 FSHLDFMWGSGAKDLLYDRTIQILR 46
+H DF+ G AKDL+Y+ I R
Sbjct: 391 LAHADFVIGVCAKDLVYNDVISFFR 415
>07_01_1124 +
10392909-10392974,10393037-10393455,10393503-10393657,
10393792-10394247,10394379-10395298
Length = 671
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 423 ACLHCVRQKRITYL--CTSPGKMCHQR 497
AC+HC+ + TYL C MCH+R
Sbjct: 282 ACIHCMDETESTYLKHCRKVVYMCHRR 308
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = -1
Query: 483 FFQAMCTNMLFAFAGRSEDMH-NATMLPVKLGHTPAGIAVRQIAHYGQLINKNFFRRYDH 307
F+Q +C A R ++MH T +PVK G T + +N+ F
Sbjct: 218 FYQPVCVRQCVANLQRHDNMHAETTAVPVKPGETAL------LRFINAALNQELFVSIAQ 271
Query: 306 GRLTNWRVYRSFTPPRYDLSLITAP 232
++T V S+T P L+ AP
Sbjct: 272 HKMTVVGVDASYTKPFTTSVLMIAP 296
>01_06_1836 + 40228508-40230448
Length = 646
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 201 FADVRDVRKLHAE-LGRSVGMFRVPHATFSHLDFMWGSGAKDLLYDRTIQILRSLGD 34
F D + K +E L R +GM+ L+ ++ A+D + + + IL LGD
Sbjct: 330 FGDAIAIGKRSSEKLFRILGMYEALDEVLPELEGLFSGDARDFIKEEAVGILMRLGD 386
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 435 CVRQKRITYLCTSPGKMCHQRRISF 509
C + I LCTS GK+ + RR++F
Sbjct: 553 CTPGRMIDILCTSSGKITNLRRVTF 577
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 435 CVRQKRITYLCTSPGKMCHQRRISF 509
C + I LCTS GK+ + RR++F
Sbjct: 414 CTPGRMIDILCTSSGKITNLRRVTF 438
>02_04_0561 +
23879976-23879981,23880531-23882558,23882687-23882722,
23882826-23882939,23883158-23883226,23883311-23883445
Length = 795
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 515 LVKKSDLPNSSFIPIRLVSASILLACGAMS 604
+V K D+P ++FI + S+LL CG +S
Sbjct: 242 VVGKYDMPLATFIGVNHHGQSVLLGCGLLS 271
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 660 MQAYAPVAYLEFNANRLLKLIAPHANSIEALTSL-IGINELFG 535
M +A + L+ NRL LI P S+ LTSL + N++ G
Sbjct: 494 MSRFANLTELDLAGNRLSGLIPPSMQSLTKLTSLNLSSNQISG 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,359,311
Number of Sequences: 37544
Number of extensions: 385242
Number of successful extensions: 863
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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