Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g07r
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...   109   2e-24
Z79696-2|CAB01973.1|  405|Caenorhabditis elegans Hypothetical pr...    97   1e-20
U64849-2|AAC48051.1|  411|Caenorhabditis elegans Hypothetical pr...    97   1e-20
Z81055-8|CAB02896.2|  409|Caenorhabditis elegans Hypothetical pr...    93   2e-19
AF067942-2|AAG45574.1|  403|Caenorhabditis elegans Hypothetical ...    89   2e-18
Z70780-7|CAA94824.1|  411|Caenorhabditis elegans Hypothetical pr...    84   8e-17
AF022976-9|AAC69088.2|  404|Caenorhabditis elegans Hypothetical ...    78   5e-15
AL117200-4|CAB60584.1|  401|Caenorhabditis elegans Hypothetical ...    58   8e-09
AF067942-3|AAL11486.1|  351|Caenorhabditis elegans Hypothetical ...    56   3e-08
U41548-5|AAA83202.2|  135|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical p...    28   7.5  
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    27   9.9  

>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
            protein Y57E12B.3 protein.
          Length = 684

 Score =  109 bits (262), Expect = 2e-24
 Identities = 62/215 (28%), Positives = 105/215 (48%), Gaps = 1/215 (0%)
 Frame = -1

Query: 687  PEYNSKIIAMQAYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFTNLG 508
            PE + KI    A APVA +  +   L + +         +  + G  E F  ++ FT L 
Sbjct: 431  PEMSKKIRKFFAMAPVARMS-HVKGLFQNLGQIYEQYNLVYQVFGDGE-FLTNNIFTKLL 488

Query: 507  MRFCADGTFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINKN 328
                 D      +C N +FA +G + +  N + + + L H PAG + R I H+ Q++ K 
Sbjct: 489  TDIFCDQAVNNPLCENFIFAVSGPNSNQFNNSRIGIYLAHNPAGTSSRNILHFAQMVKKK 548

Query: 327  FFRRYDHGRLTNWRVYRSFTPPRYDLSLITAPVFLHYVDEDIFADVRDVRKLHAELGRSV 148
               R+DHG+  N ++Y + +PP YD+  I + ++L Y D D  A+ +DV      +  S 
Sbjct: 549  RMSRFDHGKDLNLKIYGAPSPPEYDIRKINSSIYLFYSDFDWLANPKDVEGFLIPMLPSK 608

Query: 147  GMFRVPH-ATFSHLDFMWGSGAKDLLYDRTIQILR 46
             + +      F+H DF+WG  A+  +YD+ I  ++
Sbjct: 609  TLKKATKLRDFNHNDFLWGMRARKEIYDKIINTIK 643


>Z79696-2|CAB01973.1|  405|Caenorhabditis elegans Hypothetical
           protein F54F3.3 protein.
          Length = 405

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 2/215 (0%)
 Frame = -1

Query: 681 YNSKIIAMQAYAPVAYLEFNANRLLKLIAPHAN-SIEALTSLIGINELFGRSDFFTNLGM 505
           + +KI    A APV  ++ +    LK  A + +   +    + G  E    +     +  
Sbjct: 186 WGNKIKKFFALAPVGSVK-HIKGALKFFADYFSLEFDGWFDVFGSGEFLPNNWIMKLVSE 244

Query: 504 RFCADGTFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINKNF 325
             CA       +C +++F  AG   +  NAT +P+ + HTPAG + + I H+ Q++    
Sbjct: 245 SVCAGLKVEAGVCDDVMFLIAGPESNQLNATRVPIYVAHTPAGTSTQNIVHWIQMVRHGG 304

Query: 324 FRRYDHGRLTNWRVYRSFTPPRYDLSLITAPVFLHYVDEDIFADVRDVRK-LHAELGRSV 148
             +YD+G   N + Y     P YD + +  PV+L++ D D  AD  DV   L   L  S 
Sbjct: 305 TPKYDYGEKGNKKHYGQANVPAYDFTTVNRPVYLYWGDSDWLADPTDVTDFLLTHLNPST 364

Query: 147 GMFRVPHATFSHLDFMWGSGAKDLLYDRTIQILRS 43
            +       ++HLDF+WG  A   +Y+  I I+R+
Sbjct: 365 VVQNNKLIDYNHLDFIWGLRAPKDIYEPIIDIVRN 399


>U64849-2|AAC48051.1|  411|Caenorhabditis elegans Hypothetical
           protein K04A8.5 protein.
          Length = 411

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 4/214 (1%)
 Frame = -1

Query: 696 SLRPEYNSKIIAMQAYAPVAYLEFNANRLLKLIAPHANSIEALTSLIGINELFGRSDFFT 517
           S  P+++ KI    A AP+  ++      L L        E      G +ELFG S  F 
Sbjct: 188 STDPKFSRKIKKYFALAPIGSIKHAHGVFLFLGRHFGKDYEEYVKKHGSDELFGSSLLFK 247

Query: 516 NLGMRFCADGTFFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLI 337
            +    C      +  C+++   F G + +  N T +PV L HTPAG +   +AH  Q+ 
Sbjct: 248 KIVKYTCGLFDTLEEFCSDITLLFIGTANENWNQTRIPVYLAHTPAGSSSNVMAHLDQMF 307

Query: 336 NKNFFRRYDHGRLTNWRVYRSFTPPRYDLS-LITAPVFLHYVDEDIFADVRDVRK-LHAE 163
           +      +D G   N + Y    PP+Y+ + +   P++L + D+D  +  +D+ + L A+
Sbjct: 308 SYGGVPTFDMGEEKNLKAYGQKLPPQYNFTGIADVPIYLFWSDDDWLSTKQDLEETLFAQ 367

Query: 162 LGRSV--GMFRVPHATFSHLDFMWGSGAKDLLYD 67
           L   V  G FR+ +  ++HL F+WG+ A   +Y+
Sbjct: 368 LNSQVVQGSFRIEN--YNHLHFIWGTNAASQVYN 399


>Z81055-8|CAB02896.2|  409|Caenorhabditis elegans Hypothetical
           protein F01G10.7 protein.
          Length = 409

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 49/148 (33%), Positives = 86/148 (58%), Gaps = 2/148 (1%)
 Frame = -1

Query: 483 FFQAMCTNMLFAFAGRSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINKNFFRRYDHG 304
           F Q +CT +   F   +E M N + + V L HTPA  +V+ + H+ QL+      ++D+G
Sbjct: 247 FMQNICT-LDIGFIDGNEKMFNQSRVGVYLCHTPAATSVKDLQHWIQLVKSQTVSKFDYG 305

Query: 303 RLTNWRVYRSFTPPRYDLSLITAPVFLHYVDEDIFADVRDVR-KLHAELGRSV-GMFRVP 130
              N   Y   TPP YDL+ I  P +L++  +DI AD +D+R  + +++ +++ G   +P
Sbjct: 306 TDGNIIEYGQPTPPEYDLTQINTPTYLYWSRDDILADTQDIRDSILSKMNKTIAGSLELP 365

Query: 129 HATFSHLDFMWGSGAKDLLYDRTIQILR 46
           H  +SH+DF++G+ A   LY + I+ ++
Sbjct: 366 H--YSHMDFVFGTHAAFDLYPKIIETIQ 391


>AF067942-2|AAG45574.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK6.7a protein.
          Length = 403

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 8/173 (4%)
 Frame = -1

Query: 546 ELFGRSDFFTN-----LGMRFCADGTFFQA-MCTNMLFAFAGRSEDMHNATMLPVKLGHT 385
           ++FG  +F  N     L  +    G   +A +C N+LF  AG   D  N T +PV   H 
Sbjct: 223 DIFGAGEFLPNNWAMKLAAKDICGGLKVEADLCDNVLFLIAGPESDQWNQTRVPVYATHD 282

Query: 384 PAGIAVRQIAHYGQLINKNFFRRYDHGRLTNWRVYRSFTPPRYDLSLIT-APVFLHYVDE 208
           PAG + + I H+ Q+++      YD G  TN + Y    PP YD + I    ++L++ D 
Sbjct: 283 PAGTSTQNIVHWMQMVHHGGVPAYDWGTKTNKKKYGQANPPEYDFTAIKGTKIYLYWSDA 342

Query: 207 DIFADVRDVRK-LHAELGRSVGMFRVPHATFSHLDFMWGSGAKDLLYDRTIQI 52
           D  AD  DV   L   L  ++         ++HLDF WG  A D +Y   I++
Sbjct: 343 DWLADTPDVPDYLLTRLNPAIVAQNNHLPDYNHLDFTWGLRAPDDIYRPAIKL 395


>Z70780-7|CAA94824.1|  411|Caenorhabditis elegans Hypothetical
           protein F46B6.8 protein.
          Length = 411

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 8/175 (4%)
 Frame = -1

Query: 555 GINELFGRSDFF-----TNLGMR-FCADGTFFQAMCTNMLFAFAGRSEDMHNATMLPVKL 394
           G  ELFG  DF      T +  +  C        +C N LF   G   D  NA+   +  
Sbjct: 227 GWYELFGSKDFLPDNWITKMAAKDICGASEKEAELCDNELFLIGGPESDQWNASRTAIYS 286

Query: 393 GHTPAGIAVRQIAHYGQLINKNFFRRYDHGRLTNWRVYRSFTPPRYDLSLIT-APVFLHY 217
              PAG + + I H+ Q++       +D G+  N + Y   TPP YD   I    + L++
Sbjct: 287 SQDPAGTSTQNIVHWMQMVRNGRVPAFDWGKKINKKKYGQDTPPEYDFGAIKGTKIHLYW 346

Query: 216 VDEDIFADVRDVRK-LHAELGRSVGMFRVPHATFSHLDFMWGSGAKDLLYDRTIQ 55
            D+D   D  D+   L  EL  +V    V    ++HLDF WG  A   +YD+ I+
Sbjct: 347 SDDDWLGDPTDIHDFLLKELNPAVIAENVNLKEYNHLDFTWGLNATFQIYDKAIK 401


>AF022976-9|AAC69088.2|  404|Caenorhabditis elegans Hypothetical
           protein R11G11.14 protein.
          Length = 404

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 8/167 (4%)
 Frame = -1

Query: 546 ELFGRSDFFTN-----LGMRFCADGTFFQA-MCTNMLFAFAGRSEDMHNATMLPVKLGHT 385
           ++FG  +F  N     L  +    G   ++ +C N+ F  AG   D  N+T +PV   H 
Sbjct: 224 DVFGAGEFLPNNWAMKLAAKDICGGLKIESDLCDNVCFLIAGPESDQWNSTRVPVYASHD 283

Query: 384 PAGIAVRQIAHYGQLINKNFFRRYDHGRLTNWRVYRSFTPPRYDLSLIT-APVFLHYVDE 208
           PAG A + I H+ Q++       YD G   N + Y    PP YD + I    ++L++ D 
Sbjct: 284 PAGTATQNIVHWIQMVRHGGVPAYDWGSKENKKKYGQANPPEYDFTAIKGTQIYLYWSDA 343

Query: 207 DIFADVRDVRK-LHAELGRSVGMFRVPHATFSHLDFMWGSGAKDLLY 70
           D  AD  D+   L   L  ++         ++H DF++G  A + +Y
Sbjct: 344 DWLADKTDITNYLLTRLNPAIIAQNNYFTDYNHFDFVFGLRAPNDIY 390


>AL117200-4|CAB60584.1|  401|Caenorhabditis elegans Hypothetical
           protein Y50E8A.7 protein.
          Length = 401

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
 Frame = -1

Query: 501 FCADGTFFQAMCTNMLFAFAG-RSEDMHNATMLPVKLGHTPAGIAVRQIAHYGQLINKNF 325
           FC+   FF  +C+      AG  +    N + +P+ L H P+  +   + H+ Q+   + 
Sbjct: 242 FCSS-KFFTFLCSAGFKVAAGIETLGQVNDSRIPIILSHFPSATSTLNLLHWMQIFKYHE 300

Query: 324 FRRYDHGRLTNWRVYRSFTPPRYDLSLITAPVFLHYVDEDIFADVRDVRK-LHAELGRS- 151
            RR D G   N   Y     PR ++  I A   L++  +D   D  DVR+ +  ++G   
Sbjct: 301 LRRLDLGTARNLIAYGQKDAPRLEIGNIIAQTILYFSKDDQITDEVDVREIIMKQMGPGL 360

Query: 150 VGMFRVPHATFSHLDFMWGSGAKDLLY 70
           +  + + H  F+H DF+ G  A D +Y
Sbjct: 361 IESYDLDH--FTHFDFILGLRATDEVY 385


>AF067942-3|AAL11486.1|  351|Caenorhabditis elegans Hypothetical
           protein ZK6.7b protein.
          Length = 351

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
 Frame = -1

Query: 546 ELFGRSDFFTN-----LGMRFCADGTFFQA-MCTNMLFAFAGRSEDMHNATMLPVKLGHT 385
           ++FG  +F  N     L  +    G   +A +C N+LF  AG   D  N T +PV   H 
Sbjct: 223 DIFGAGEFLPNNWAMKLAAKDICGGLKVEADLCDNVLFLIAGPESDQWNQTRVPVYATHD 282

Query: 384 PAGIAVRQIAHYGQLINKNFFRRYDHGRLTNWRVYRSFT 268
           PAG + + I H+ Q+++      YD G  TN + Y   T
Sbjct: 283 PAGTSTQNIVHWMQMVHHGGVPAYDWGTKTNKKKYGQST 321


>U41548-5|AAA83202.2|  135|Caenorhabditis elegans Hypothetical
           protein M02F4.2 protein.
          Length = 135

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 432 HCVRQKRITYLCTSPGKMCHQRRISFPSW 518
           +CVRQ     +CTS G MC         W
Sbjct: 97  NCVRQMETQIICTSTGGMCRDHMDKMTEW 125


>Z79756-11|CAB02119.2|  614|Caenorhabditis elegans Hypothetical
           protein F53C11.6 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -2

Query: 200 LLM*GMSENYMPNWVVQLECLE--YHMQLSVILISCGDLVPR 81
           LL  G+S +++ +WV     ++  Y + +SV+ I  GDLVPR
Sbjct: 253 LLYIGLS-SWIISWVENWNMMDGFYFVMMSVLTIGFGDLVPR 293


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 630 EFNANRLLKLIAPHANSIEALTSLIGINELF 538
           +F  +R+ +  APH +S E  T +  +NELF
Sbjct: 869 QFGRDRMNQSQAPHCDSYELKTFISTVNELF 899


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,530
Number of Sequences: 27780
Number of extensions: 349907
Number of successful extensions: 799
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)