Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g07f
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...   101   9e-23
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    99   4e-22
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    87   1e-18
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   4.3  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   5.7  
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    25   7.5  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score =  101 bits (241), Expect = 9e-23
 Identities = 61/136 (44%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
 Frame = +2

Query: 164 DIVGLIKKYRYPVEVHKVVTEDGYILEMQRIPHGRDQNNR---PDPKK-PAVLVMHGLFA 331
           DI  + K   Y VE H V TED YIL + RI   +D   R   P PKK P V   HGL  
Sbjct: 80  DIREMCKISGYYVEDHLVRTEDDYILCIHRI--SKDSPGRIGSPHPKKLPVVYCHHGLLM 137

Query: 332 SAADWVL-MGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIG 508
           ++  WV  + P   L + L   GYDVWLGN RG  YSR H++ D   D EFW FS ++  
Sbjct: 138 NSEVWVCNVDPRNCLVFDLVNKGYDVWLGNNRGNKYSRQHLRFD-STDKEFWDFSIDDFA 196

Query: 509 TRDLPAMIDYTLKVAG 556
             D+P  IDY LK +G
Sbjct: 197 QYDIPDTIDYILKTSG 212


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 99.1 bits (236), Expect = 4e-22
 Identities = 51/132 (38%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
 Frame = +2

Query: 164 DIVGLIKKYRYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPKKPAVLVMHGLFASAAD 343
           +I  + + + Y VE H V T+D +IL + RI H +   +    K+  V   HGL  ++  
Sbjct: 74  NIYEICEAFGYRVEEHLVRTQDNFILCLHRITHPKQSQH----KREVVYCHHGLMTNSEL 129

Query: 344 WVLMGPGV-GLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDL 520
           WV +      L ++L E+GYDVWLGN RG  YSR HI   P  D EFW FS +++   D+
Sbjct: 130 WVAVNESERSLPFVLIESGYDVWLGNNRGNKYSRKHITYKP-KDEEFWNFSLDDMAMFDI 188

Query: 521 PAMIDYTLKVAG 556
           P  +DY L+  G
Sbjct: 189 PDTVDYILRETG 200


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
 Frame = +2

Query: 164 DIVGLIKKYRYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPKKPAVLVMHGLFASAAD 343
           D + L   + Y +E H V T DGY+L + R+   +          P VL +HGL  ++  
Sbjct: 74  DTIDLCALHGYDLEEHFVRTTDGYLLGLHRVYKKKKGKIEELNYLPPVLFIHGLMMNSES 133

Query: 344 WVL-MGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDL 520
           WV  +     + + L E GYDVWLGN RG  YS  +IK    N  +FW FS + I   D+
Sbjct: 134 WVCNLKKEDAIPFALVEQGYDVWLGNLRGNKYSIKNIKFSSQN-PKFWDFSLDSIAIFDI 192

Query: 521 PAMIDYTLKV 550
           P+++ Y L V
Sbjct: 193 PSIVKYILSV 202


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 18/55 (32%), Positives = 21/55 (38%)
 Frame = +2

Query: 116 AQGARYSTNVTEDALLDIVGLIKKYRYPVEVHKVVTEDGYILEMQRIPHGRDQNN 280
           +QG  YSTN   DA  DI      Y           E  Y    +  PH + QNN
Sbjct: 198 SQGYMYSTNTAHDA-TDIPSSFNFYNTQASTAPNPQEINYQWSHEYRPHTQYQNN 251


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 8   LTMKWLLGLFFCICVNQATA 67
           L   WL+ +FF ICV+ + A
Sbjct: 100 LLWAWLIAMFFLICVSMSMA 119


>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 68  RRSPHADYVEELYRLDAQGARYSTNVTEDALLDIVGLIK 184
           + +P++D + +LY L  Q      N  +  LLD+ G  K
Sbjct: 16  KETPNSDELLKLYALFKQATVGDNNTEKPGLLDLKGKFK 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,536
Number of Sequences: 5004
Number of extensions: 52015
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)