Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12g07f
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 116 2e-26
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 93 2e-19
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 88 4e-18
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 61 7e-10
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 48 5e-06
01_05_0145 + 18588201-18588242,18588925-18589044,18589201-185894... 36 0.029
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 30 1.4
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 29 3.3
06_02_0329 - 14483954-14483984,14490155-14490843 29 3.3
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644... 28 5.8
06_01_0198 + 1529190-1530371 28 5.8
03_02_0992 + 13049871-13050449 27 7.6
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 116 bits (278), Expect = 2e-26
Identities = 53/129 (41%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Frame = +2
Query: 179 IKKYRYPVEVHKVVTEDGYILEMQRIPHGRD---QNNRPDPKKPAVLVMHGLFASAADWV 349
+ + YP E H+V T+DGYIL +QRIP GR + VL+ HG+ W+
Sbjct: 53 VAPFGYPCEEHEVTTQDGYILGLQRIPRGRIGGVTGGGAAAARQPVLLQHGVLVDGMTWL 112
Query: 350 LMGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAM 529
L P L YILA+ G+DVW+ N RGT +S H+ LDP + S +W +SW++I D+PA+
Sbjct: 113 LGSPEESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKSRS-YWNWSWDDIVVNDMPAI 171
Query: 530 IDYTLKVAG 556
+DY G
Sbjct: 172 VDYVCSHTG 180
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/95 (46%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Frame = +2
Query: 179 IKKYRYPVEVHKVVTEDGYILEMQRIPHGRDQN--NRPDPKKPAVLVMHGLFASAADWVL 352
+ + Y E H V TEDGYIL +QRIP GR + K VL+ HGL W++
Sbjct: 59 VAPFGYACEEHTVTTEDGYILSLQRIPSGRGETAAGGGGGGKVPVLLQHGLMMDGVTWLM 118
Query: 353 MGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKL 457
P L YILA+ GYDVW+ N+RGT YSR H L
Sbjct: 119 NSPNESLGYILADNGYDVWIANSRGTVYSRHHTSL 153
Score = 33.5 bits (73), Expect = 0.12
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 479 FWKFSWEEIGTRDLPAMIDYTLKVAG 556
+W +SW+E+ ++DL A++ Y AG
Sbjct: 200 YWNWSWDELSSKDLSAVVQYVYSQAG 225
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 88.2 bits (209), Expect = 4e-18
Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Frame = +2
Query: 194 YPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPKKPAVLVMHGLFASAADWVLMGPGVGL 373
YP H V T+DG++L +Q IPHG+ N D P V + HGLF W + L
Sbjct: 56 YPCTEHNVETKDGFLLSLQHIPHGK--NKAADSTGPPVFLQHGLFQGGDTWFINSAEQSL 113
Query: 374 AYILAEAGYDVWLGNARGTYYSRAH--IKLDPDNDSEFWKFSWEEIGTR 514
YILA+ G+DVW+GN RGT +S+ H + ++ W W +G R
Sbjct: 114 GYILADNGFDVWIGNVRGTRWSKGHSTFSVHDKVNTLHWN-EWRALGLR 161
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 479 FWKFSWEEIGTRDLPAMIDYTLKV 550
FW +SW+E+ DL AM+ Y V
Sbjct: 209 FWDWSWQELAEYDLLAMLGYVYTV 232
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 60.9 bits (141), Expect = 7e-10
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +2
Query: 188 YRYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPKKPAVLVMHGLFASAADW 346
+ YP E +KV TEDGYIL ++RIPHG +N +P VL+ HGL + +W
Sbjct: 80 FGYPCEEYKVTTEDGYILSLKRIPHGPHDSNTSTEMRPPVLLFHGLMVAYWEW 132
Score = 31.1 bits (67), Expect = 0.62
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 479 FWKFSWEEIGTRDLPAMIDYTLKVAG 556
+W++SW+E+ + DLPA++ + G
Sbjct: 129 YWEWSWDELASYDLPAVLQFAYDHTG 154
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/53 (43%), Positives = 36/53 (67%)
Frame = +2
Query: 392 AGYDVWLGNARGTYYSRAHIKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKV 550
AGYDV+LGN RG SR H+ + + ++WK+S E GT+D+PA+++ K+
Sbjct: 125 AGYDVFLGNLRGLV-SREHVDKNISS-YKYWKYSVNEHGTKDMPAIVEEIHKI 175
>01_05_0145 +
18588201-18588242,18588925-18589044,18589201-18589457,
18589980-18590048,18590091-18590115
Length = 170
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 176 LIKKYRYPVEVHKVVTEDGYILEMQRIP 259
+I + YP E KVVT DGY+L ++RIP
Sbjct: 135 VITELGYPFEAIKVVTSDGYVLLLERIP 162
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +2
Query: 374 AYILAEAGYDVWLGNARGTYYSRAHIKLDPDND-SEFWKFSWEEIGTRDLPAMIDYTLK 547
A +L E G +W GNA Y + + D + F W G DYT K
Sbjct: 315 AKVLQEKGIHIWDGNASREYLDSVGLAHREEGDLGPVYGFQWRHFGAEYTDMHADYTGK 373
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 383 LAEAGYDVWLGNARGTYYSRA-HIKLDPDNDSEFWKFSWEEIGTRDLPAMIDY 538
L +AG+ V+ + GTY+ H DND EF ++ E+G +P + Y
Sbjct: 370 LKDAGFIVYPSS--GTYFVMVDHTPFGFDNDIEFCEYLIREVGVVAIPPSVFY 420
>06_02_0329 - 14483954-14483984,14490155-14490843
Length = 239
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 407 WLGNARGT-YYSRAHIKL-DPDNDSEFWKFSWEEIGTRDLP 523
+LG A T + R HI++ D DN +W +W+ D P
Sbjct: 197 YLGRAVATGIFERIHIRIYDDDNCEAYWHLAWDNNYFDDFP 237
>07_03_1293 -
25563431-25563545,25564078-25564196,25564300-25564467,
25564565-25564627,25564709-25564816,25565125-25565237,
25565313-25565609,25565724-25565802,25566116-25566224,
25566324-25566365,25567023-25567153,25568100-25568648
Length = 630
Score = 27.9 bits (59), Expect = 5.8
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Frame = +2
Query: 95 EELYRLDAQGARYSTNVTEDALLDIVGLIKKYRYPVEVHKVVTEDGYIL-------EMQR 253
E L R+ ++G +YS + + L+ I+ ++ VH+ + + ++ +++
Sbjct: 233 ELLDRILSRGGKYSEDDAKAVLVQILNVVSFCHIQGVVHRDLKPENFLFTSKDENSQLKA 292
Query: 254 IPHGRDQNNRPDPKKPAVL---------VMHGLFASAAD-WVLMGPGVGLAYILAEAGYD 403
I G +PD + ++ V+H +++ AD W + GV +AYIL
Sbjct: 293 IDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRCYSTEADVWSI---GV-IAYILLCGSRP 348
Query: 404 VWLGNARGTYYSRAHIKLDPDNDSEFW 484
W G + R+ +K DP + W
Sbjct: 349 FWARTESGIF--RSVLKADPSYNEAPW 373
>06_01_0198 + 1529190-1530371
Length = 393
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 350 LMGPGVGLAYILAEAGYDVWLGNARGTYYSRAHIKLDPDND 472
L+ GL + + A ++L A +Y R H+ PD +
Sbjct: 261 LLAAAAGLQLLASRAAVQMYLNEAVFCWYQRLHVSRSPDTE 301
>03_02_0992 + 13049871-13050449
Length = 192
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 433 ICTTCISKPHIITSFSQNVC*TNTWTHQNPVSSRS 329
+C T ++ PH +C T+T H++P RS
Sbjct: 138 VCATTVAPPHPARERGNRLCTTSTSHHRHPPLLRS 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,266
Number of Sequences: 37544
Number of extensions: 344018
Number of successful extensions: 941
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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