Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g05f
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    30   0.25 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.8  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    26   4.1  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   7.2  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   7.2  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    25   7.2  

>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 151 SQEPSYVCL--HLILS*TMSTRAAGIFREEKTS*KFVAP*KVSTPPASAPSNWIASPTTY 324
           S EP Y+CL  H  L    S R++   R+ +   +F+AP  ++T   +  S W+ S   +
Sbjct: 263 SFEPLYICLQVHSYLGLLSSFRSS-FERDRRRQQEFLAPKSLTTLDMAVVSEWLNSIAGF 321

Query: 325 SLVNF 339
            +V +
Sbjct: 322 MIVEY 326


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -1

Query: 331  PVNKL*EMLSNSKVLKPAALTPSTEPRTFRMFSPPGRCQPPAYSLFTIGSNGDKRNWA 158
            PVN     L+ +   +P+   P+        F+P  + QPPA S     S  D  NW+
Sbjct: 1594 PVNNSGSPLAMNAAGQPSLAVPAVPSAPSNHFNPFAKMQPPAPSPLQ-PSGHDSDNWS 1650


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 198 NEYAGGWHLPGGENILKVRGSVEGVNAAGFSTFE---LDSISYNLFTGQLHLSLSLNSVA 368
           ++YA   H   G  +   R   +G   AG+  +    LD+I  N+ T Q+  S     + 
Sbjct: 631 SQYARS-HQLNGITLSGDRSDKKGALTAGYRDYRNSRLDAIK-NVKTYQIKFS----DLQ 684

Query: 369 ASIDAAEGEVQIFDRKLTA 425
            S++    E++ FD+K+TA
Sbjct: 685 ESLEKCRSEIESFDQKITA 703


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 283 PAALTPSTEPRTFRMFSPPGRCQPPAY 203
           PAA   S+EPRTF  F       PP +
Sbjct: 185 PAASPASSEPRTFSSFEDQYGRLPPGW 211


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 75   VAAVPYGDVDLAESQRIVDGIIEN 146
            VAA PY DVD+  +   +  IIEN
Sbjct: 1106 VAAPPYNDVDVYTNDVALIAIIEN 1129


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 81  AVPYGDVDLAESQRIVDGIIENWISRAQLRLSPFDPIVNN 200
           A  Y DV L +   ++  IIEN +  AQ ++  F P++ +
Sbjct: 556 ATMYADV-LQDEVDLLKSIIENQVLDAQNKVDEFTPVLES 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,028
Number of Sequences: 5004
Number of extensions: 33938
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)