Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g05f
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25360.1 68417.m03649 expressed protein                             34   0.069
At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa s...    29   2.0  
At5g53380.1 68418.m06633 hypothetical protein                          28   3.4  
At3g12440.1 68416.m01549 extensin family protein contains simila...    28   3.4  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    27   7.9  

>At4g25360.1 68417.m03649 expressed protein
          Length = 533

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 333 QLHLSLSLNSVAASIDAAEGEVQIFDRKLTADASGGIAV 449
           Q+H+ LSL++   +I     ++  FD+ LT+D+S G+ V
Sbjct: 63  QVHVPLSLSNHTVNILQKSSDINAFDKNLTSDSSSGLPV 101


>At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa
           subunit, mitochondrial identical to NADH-ubiquinone
           oxidoreductase 20 kDa subunit mitochondrial [precursor]
           SP:Q42577 from [Arabidopsis thaliana]; contains Pfam
           profile: PF01058 NADH ubiquinone oxidoreductase, 20 Kd
           subunit
          Length = 218

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 277 ALTPSTEPRTFRMFSPPGRCQPP----AYSLFTIGSNGDKRNWA 158
           AL+PST P ++    PP    PP      + F I    D  NWA
Sbjct: 36  ALSPSTSPTSYTRPGPPSTSPPPPGLSKAAEFVISKVDDLMNWA 79


>At5g53380.1 68418.m06633 hypothetical protein
          Length = 483

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 96  DVDLAESQRIVDGIIENWISRAQLRLSPFD 185
           D+DL E  +  DG +++++SR  L LSP D
Sbjct: 88  DIDLQEINKDGDGFVDDYVSR--LTLSPLD 115


>At3g12440.1 68416.m01549 extensin family protein contains
           similarity to Swiss-Prot:Q38913 extensin 1 precursor
           (AtExt1) (AtExt4) [Arabidopsis thaliana]
          Length = 353

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 292 VLKPAALTPSTEPRTFRMFSPPGRCQPPAYSL 197
           V  PA     + P  +R  SPP R  PPA +L
Sbjct: 188 VSPPARYLSVSPPARYRSVSPPARSDPPANTL 219


>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 152 LKSPVTFVSI*SYREQ*VRGRLASSGRRKHPESSW 256
           LKS +   S   +R + +R  +   G RKHP  SW
Sbjct: 731 LKSNIYSASGFWHRSEMIREEMRERGYRKHPAKSW 765


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,986,517
Number of Sequences: 28952
Number of extensions: 187525
Number of successful extensions: 604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)