Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g01r
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1022 - 8815675-8816809,8819696-8819907                           32   0.25 
01_06_1623 - 38716606-38717424                                         29   1.7  
02_05_0162 + 26398252-26399886                                         27   7.1  
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77...    27   7.1  
02_05_0612 + 30348495-30348995,30349679-30350023                       27   9.3  

>07_01_1022 - 8815675-8816809,8819696-8819907
          Length = 448

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 367 NQFVGTWXWAAGYGRTXDASGSNTRK 290
           N   G+W WA G+GR  +A+G N ++
Sbjct: 79  NYSEGSWVWAPGHGRRYNATGCNVKE 104


>01_06_1623 - 38716606-38717424
          Length = 272

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 427 RVGYXNVIQPIFLXPSHLXNNQFVGTWXWAAGYGRTXDASGS 302
           R+ Y N   P ++   H+   Q +G W W     +  DA+G+
Sbjct: 221 RIRYANDRIPPYIVSRHVVPVQILGIWVWDESQSQYVDANGA 262


>02_05_0162 + 26398252-26399886
          Length = 544

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 204 TPRGXAAPXXE-TPVDPSXSRMEERRTLIGITSXGAAQCQRGHPAGFARV 58
           TP+  AAP  E +P++PS   +    +   +    A +  R H A   RV
Sbjct: 28  TPQQRAAPRREQSPLNPSSQSIRSASSGTELAGSAATEASRAHIANLDRV 77


>01_01_0103 -
          773727-774737,774797-774813,774852-775078,777465-778237
          Length = 675

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 13 CNHLESSTYPRSERGDP 63
          C HL++ +YP   RGDP
Sbjct: 39 CGHLQNVSYPFRRRGDP 55


>02_05_0612 + 30348495-30348995,30349679-30350023
          Length = 281

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 117 ITSXGAAQCQRGHPAGFARVTSFASWIRARL 25
           +T+ G A    G   G  RV  ++ W+RAR+
Sbjct: 97  VTNRGVATAVSGTGYGDYRVRDYSEWLRARI 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,199
Number of Sequences: 37544
Number of extensions: 224411
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)