Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12g01r
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45) 36 0.016
SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41) 31 0.59
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0) 30 0.78
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 29 1.4
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012) 29 2.4
SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 28 4.2
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 28 4.2
SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33) 27 5.5
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.3
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
Length = 234
Score = 35.9 bits (79), Expect = 0.016
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -2
Query: 358 VGTWXWAAGYGRTXDASGSNTR-KHQVALQVITNADCARTFGXGVIAST-LC 209
VG+ W G+GR D+SG Q + + ++ DC R +G G+ + T LC
Sbjct: 64 VGSKCWLTGWGRQVDSSGPLPDILQQARIPIASHEDCKRKYGSGIYSYTHLC 115
>SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)
Length = 376
Score = 30.7 bits (66), Expect = 0.59
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +3
Query: 72 QPDVPADIEQRQXR*SRSGCDVPPYVKXRGPPESPRXVLRPPWVFTXRVDAMTPXPKVRA 251
+PD D Q + +PP+ + R P +S R PPW + TP RA
Sbjct: 203 EPDTTVDSAQSRYPRGHRKSQIPPWTRERSPVDSSR-ARSPPWAAPQQ---ETPMDSARA 258
Query: 252 QS 257
+S
Sbjct: 259 RS 260
>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 532
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3
Query: 135 RRTLIGITSXGAAQCQRGHPAGFARVTSFASWI 37
R L G S G C H FARV+SF WI
Sbjct: 269 RWVLRGAVSWGQPMCGTDHYTVFARVSSFIDWI 301
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 355 GTWXWAAGYGRTXDASGSNTRKHQVALQVITNADCARTFGXGVIASTLC 209
GT W G+GR + Q ++ V++ A C + + + S LC
Sbjct: 822 GTRCWITGWGRLASGGTAPDILQQASVPVVSRARCEKAYPGKIHDSMLC 870
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 126 LIGITSXGAAQCQRGHPAGFARVTSFASWIR 34
L G S G C H FARV S+ WI+
Sbjct: 301 LHGAVSYGLRNCPTTHYTVFARVASYTDWIK 331
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 126 LIGITSXGAAQCQRGHPAGFARVTSFASWIR 34
L G S G C H FARV S+ WI+
Sbjct: 635 LHGAVSYGLRNCPTTHYTVFARVASYTDWIK 665
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 126 LIGITSXGAAQCQRGHPAGFARVTSFASWIR 34
L G S G C H FARV S+ WI+
Sbjct: 965 LHGAVSYGMKYCPTTHYTVFARVASYTDWIK 995
>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
Length = 1148
Score = 28.7 bits (61), Expect = 2.4
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 63 WRXQPDVPADIEQRQXR*SRSGC--DVPPYVKXRGPPESPRXVLRPPWVFTXRVDAMTPX 236
WR Q D +R+ R GC D PP K P S + L +T + P
Sbjct: 872 WRPQSSYKDD--KRKYRTPSPGCFIDSPPQDKTSKRPPSAQRQLSAVDEYTTFLVQPRPP 929
Query: 237 PKVRAQSA 260
PK RA+SA
Sbjct: 930 PKPRAESA 937
>SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.7 bits (61), Expect = 2.4
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +3
Query: 63 WRXQPDVPADIEQRQXR*SRSGC--DVPPYVKXRGPPESPRXVLRPPWVFTXRVDAMTPX 236
WR Q D +R+ R GC D PP K P S + L +T + P
Sbjct: 67 WRPQSSYKDD--KRKYRTPSPGCFIDSPPQDKTSKRPPSAQRQLSAVDEYTTFLVQPRPP 124
Query: 237 PKVRAQSA 260
PK RA+SA
Sbjct: 125 PKPRAESA 132
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 129 TLIGITSXGAAQCQRGHPAGFARVTSFASWI 37
TL+G+TS G +P +A++T W+
Sbjct: 416 TLVGVTSWGYGCAHPDYPGIYAKLTELKDWV 446
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 355 GTWXWAAGYGRTXDASGSNTRKHQVALQVITNADCAR--TFGXGVIASTL 212
GT W G+GR S Q ++++ A+C + ++ ++ST+
Sbjct: 339 GTECWITGWGRLHSGGASPEILQQAKTKLLSYAECTKNGSYEAAAVSSTM 388
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = -2
Query: 358 VGTWXWAAGYGRTXDASGSNTRKHQVALQVITNADCARTFGXGVIA-STLCV--NTQXXX 188
VG + AG+GR Q + +++ DC R +G + S +CV NT+
Sbjct: 442 VGAICYIAGWGRLQSLGDVALTLQQAKVPIVSKEDCKRAYGAIIRPYSHICVGFNTENAA 501
Query: 187 XXXXXXXXGPL 155
GPL
Sbjct: 502 SSCQGDSGGPL 512
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 126 LIGITSXGAAQCQRGHPAGFARVTSFASWIR 34
L G S G C + FARV S+ WI+
Sbjct: 280 LHGAVSYGKLHCPTTYYTVFARVASYTDWIK 310
>SB_4758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 159 GPPESPRXVLRPPWVFTXRVDAMTPXPKVRAQSALVIT 272
G +SP+ V + P V T +T PKV QS+ +T
Sbjct: 692 GAIQSPQEVTQSPQVVTQSPQEVTQSPKVVTQSSTEVT 729
>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
Length = 1065
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 142 GGTSHPDRDHLXWRCSMSAGTSG 74
GG HPDR + WR ++ SG
Sbjct: 969 GGVHHPDRRLVIWRATLGDSDSG 991
>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 1007
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = -2
Query: 406 IQPIFLXPSHLXNNQFVGTWXWAAGYGRTXDASGSNTRKHQVALQVITNADCARTFGXGV 227
++P+ L P+ + VGT GYGR + +T+ + V++ ++C +
Sbjct: 549 VRPVCL-PTSATPDLAVGTNCTVTGYGRVGENEDLSTQLRHATIPVLSVSECRANYSGHT 607
Query: 226 I 224
I
Sbjct: 608 I 608
>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = -2
Query: 355 GTWXWAAGYGRTXDASGSNTRKHQVALQVITNADCARTFGXGVIASTLC 209
GT W +G+GR S Q + +++ C++ + S LC
Sbjct: 370 GTRCWISGWGRLSSGGASPNVLMQAQVPLVSGQTCSQAYPGRTHYSMLC 418
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,549,390
Number of Sequences: 59808
Number of extensions: 251113
Number of successful extensions: 489
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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