Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g01r
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation fact...    29   2.1  
U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation fact...    29   2.1  
U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation fact...    29   2.1  
U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation fact...    29   2.1  
Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U93847-1|AAB58269.1|  760|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1B isoform protein.
          Length = 760

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 25  ESSTYPRSERGDPGEXSRMSPLTLSSAXRGD 117
           E   YPRSE+    + SR S +++S+   GD
Sbjct: 408 EEEDYPRSEKSGNSQKSRRSRMSISTRSSGD 438


>U93846-1|AAB58268.1|  768|Caenorhabditis elegans elongation
           factor-2 kinase EFK-1A isoform protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 25  ESSTYPRSERGDPGEXSRMSPLTLSSAXRGD 117
           E   YPRSE+    + SR S +++S+   GD
Sbjct: 408 EEEDYPRSEKSGNSQKSRRSRMSISTRSSGD 438


>U10414-7|AAN63383.1|  768|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform a protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 25  ESSTYPRSERGDPGEXSRMSPLTLSSAXRGD 117
           E   YPRSE+    + SR S +++S+   GD
Sbjct: 408 EEEDYPRSEKSGNSQKSRRSRMSISTRSSGD 438


>U10414-6|AAN63384.1|  760|Caenorhabditis elegans Elongation factor
           kinase protein1, isoform b protein.
          Length = 760

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 25  ESSTYPRSERGDPGEXSRMSPLTLSSAXRGD 117
           E   YPRSE+    + SR S +++S+   GD
Sbjct: 408 EEEDYPRSEKSGNSQKSRRSRMSISTRSSGD 438


>Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical
           protein R166.1 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 446 GYDYPRTGRIXKCDPADLPXPLTS 375
           GY+Y ++ R   CDPADL  P++S
Sbjct: 430 GYNYAKS-RKRPCDPADLHSPISS 452


>U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical
           protein C09F5.1 protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 122 SGSPRLALLNVSGDIRLXSPGSPRS 48
           SG+   + LN SGD R+  PG+ RS
Sbjct: 93  SGATNSSFLNTSGDSRVSYPGADRS 117


>Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical
           protein T13H5.3 protein.
          Length = 626

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = -1

Query: 452 RRGYDYPR--TGRIXKCDP 402
           R GY+ PR  TG+I KCDP
Sbjct: 572 RCGYNAPRLSTGKIPKCDP 590


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,448,322
Number of Sequences: 27780
Number of extensions: 170178
Number of successful extensions: 356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)