Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12g01r
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57390.1 68418.m07170 ovule development protein, putative sim...    28   2.6  
At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide...    28   2.6  
At1g26250.1 68414.m03202 proline-rich extensin, putative similar...    27   5.9  
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof...    27   7.8  

>At5g57390.1 68418.m07170 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099)[Arabidopsis thaliana]
          Length = 555

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = -1

Query: 215 PXREHPGGXQHLPXRLRWTPRFHVWRNVAP*SGSPRL---ALLNVSGDIRLXSPG 60
           P  +H G   H    ++  P  H W N+     +P+     L N   D+   SPG
Sbjct: 416 PVNDHGGTFYHTGIPIKPDPADHYWSNIFGFQANPKAEMRPLANFGSDLHNPSPG 470


>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
           identical to phage-type RNA polymerase rpoT2
           [Arabidopsis thaliana] GI:11340683
          Length = 1011

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 152 FHVWRNVAP*SGSPRLALLNVSGDIRLXSPGSPRSLLGYVLDSR 21
           F +WRN+A  + S   A LNVS   R     SP S+    L  R
Sbjct: 38  FPMWRNIAKQAISRSAARLNVSSQTRGLLVSSPESIFSKNLSFR 81


>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
           extensin gi|1165322|gb|AAB53156; contains proline-rich
           extensin domains, INTERPRO:IPR002965
          Length = 443

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 PPYVKXRGPPESPRXVLRPPWVF 206
           PPYV    PP +P     PP+V+
Sbjct: 343 PPYVDSYSPPPAPYVYKPPPYVY 365



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 138 PPYVKXRGPPESPRXVLRPPWVFT 209
           PPYV    PP +P     PP+V++
Sbjct: 368 PPYVYNYSPPPAPYVYKPPPYVYS 391



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 138 PPYVKXRGPPESPRXVLRPPWVFT 209
           PPYV    PP +P     PP+V++
Sbjct: 386 PPYVYSYSPPPAPYVYKPPPYVYS 409



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 138 PPYVKXRGPPESPRXVLRPPWVFT 209
           PPYV    PP +P     PP+V++
Sbjct: 404 PPYVYSYSPPPAPYVYKPPPYVYS 427


>At5g37040.1 68418.m04442 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 242

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 224 DDTXTESTRAVCIGDHLKSHLMLPG 298
           DD  T + R +C GDHL+    L G
Sbjct: 71  DDNPTINVRDLCFGDHLRGQHSLYG 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,004,048
Number of Sequences: 28952
Number of extensions: 160718
Number of successful extensions: 354
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)